myRT

myRT report for GCA_003546245.1_ASM354624v1

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Seq: QXNV01000026.1 Escherichia coli strain HR163 Contig_26, whole genome shotgun sequence (76069 bp)
Overview 1 RT 1: 22081-25964 bp Neighborhood of RT #1 [22081, 25969] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 22081-22797 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: domain Description: rph Location: 22084-22792 bp Feature: gene Location: 22849-23505 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: domain Description: pyrE Location: 22867-23500 bp Feature: gene Location: 23803-24762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23938-24487 bp Feature: gene Location: 24808-25404 bp Feature: domain Description: slmA Location: 24814-25390 bp Feature: domain Description: slmA Location: 2481 4-25390 bp Feature: gene Location: 25511-25969 bp Feature: domain Description: dut Location: 25517-25964 bp Feature: domain Description: dut Location: 2551 7-25964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: QXNV01000005.1 Escherichia coli strain HR163 Contig_5, whole genome shotgun sequence (275265 bp)
Overview 1 RT 1: 248476-252509 bp Neighborhood of RT #1 [248476, 252631] PRK15414 RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 248476-249792 bp Feature: domain Description: PRK15414 Location: 248479-249784 bp Feature: domain Description: PRK15414 Location: 2 48479-2 49784 bp Feature: gene Location: 249904-250155 bp Feature: gene Location: 250171-251838 bp Feature: RT Description: RVT_N Location: 250219-250456 bp Feature: RT Description: RVT_N Location: 2 502 19-2 50456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250507-251149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 50507-2 51149 bp Feature: domain Description: GIIM Note: maturase Location: 251200-251434 bp Feature: domain Description: GIIM Note: maturase Location: 2 512 00-2 51434 bp Feature: domain Description: HNHc Note: nucleases Location: 251644-251803 bp Feature: domain Description: HNHc Note: nucleases Location: 2 51644-2 51803 bp Feature: gene Location: 251879-252157 bp Feature: gene Location: 252209-252631 bp Feature: domain Description: DUF1380 Location: 252212-252509 bp Feature: domain Description: DUF1380 Location: 2 52 2 12 -2 52 509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15414 (phosphomannomutase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)