myRT

myRT report for GCA_003548115.1_ASM354811v1

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Seq: PCKE01000008.1 Salmonella enterica subsp. enterica serovar Derby strain 2014LSAL03926 2014LSAL03926_8, whole genome shotgun sequence (4999401 bp)
Overview 1 RT 1: 192124-196170 bp 2 RT 2: 766795-770338 bp Neighborhood of RT #1 [192124, 196170] YjeJ DUF4156 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [766795, 770409] RVT-Retrons INT_P4_C Feature: gene Location: 192124-192981 bp Feature: domain Description: YjeJ Location: 192127-192970 bp Feature: domain Description: YjeJ Location: 1 921 27-1 92970 bp Feature: gene Location: 193029-193394 bp Feature: domain Description: DUF4156 Location: 193110-193386 bp Feature: domain Description: DUF41 56 Location: 1 931 1 0-1 93386 bp Feature: gene Location: 193716-195413 bp Feature: RT Description: RVT_N Location: 193779-194013 bp Feature: RT Description: RVT_N Location: 1 93779-1 9401 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 194067-194712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 94067-1 9471 2 bp Feature: domain Description: GIIM Note: maturase Location: 194766-194997 bp Feature: domain Description: GIIM Note: maturase Location: 1 94766-1 94997 bp Feature: domain Description: HNHc Note: nucleases Location: 195207-195369 bp Feature: domain Description: HNHc Note: nucleases Location: 1 95207-1 95369 bp Feature: gene Location: 195551-195787 bp Feature: gene Location: 195844-196170 bp Feature: gene Location: 766795-767010 bp Feature: gene Location: 767598-767807 bp Feature: gene Location: 768055-768990 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 768166-768751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7681 66-768751 bp Feature: gene Location: 769129-769818 bp Feature: gene Location: 769849-770409 bp Feature: domain Description: INT_P4_C Location: 769858-770338 bp Feature: domain Description: INT_P4_C Location: 769858-770338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjeJ (pfam15922), DUF4156 (pfam13698), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT-Retrons, INT_P4_C (cd00801)