myRT

myRT report for GCA_003554085.1_ASM355408v1

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Seq: PWFP01000324.1 Thioalkalivibrio sp. isolate T1Sed10_3 T1-Sed10-C13083, whole genome shotgun sequence (7213 bp)
Overview 1 RT 1: 3-7212 bp Neighborhood of RT #1 [3, 7212] rve RVT-GII RVT-GII GIIM RVT-GII HTH_32 HTH_Tnp_1 HTH_Tnp_1 RVT-GII GIIM Feature: gene Location: 3-548 bp Feature: domain Description: rve Location: 279-549 bp Feature: domain Description: rve Location: 279-549 bp Feature: gene Location: 271-432 bp Feature: gene Location: 715-1011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 790-91 9 bp Feature: gene Location: 1022-2179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139-1793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 39-1 793 bp Feature: domain Description: GIIM Note: maturase Location: 1877-2096 bp Feature: domain Description: GIIM Note: maturase Location: 1 877-2096 bp Feature: gene Location: 2263-3663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2575-3118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2575-31 1 8 bp Feature: gene Location: 3717-4037 bp Feature: gene Location: 4066-4695 bp Feature: domain Description: HTH_32 Location: 4180-4390 bp Feature: domain Description: HTH_32 Location: 41 80-4390 bp Feature: gene Location: 4692-5183 bp Feature: domain Description: HTH_Tnp_1 Location: 4698-4848 bp Feature: domain Description: HTH_Tnp_1 Location: 4698-4848 bp Feature: domain Description: HTH_Tnp_1 Location: 4875-5094 bp Feature: domain Description: HTH_Tnp_1 Location: 4875-5094 bp Feature: gene Location: 5302-6555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5497-6154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5497-61 54 bp Feature: domain Description: GIIM Note: maturase Location: 6235-6457 bp Feature: domain Description: GIIM Note: maturase Location: 6235-6457 bp Feature: gene Location: 7072-7212 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), HTH_Tnp_1 (pfam01527)

Seq: PWFP01000486.1 Thioalkalivibrio sp. isolate T1Sed10_3 T1-Sed10-C18462, whole genome shotgun sequence (5701 bp)
Overview 1 RT 1: 430-2966 bp Neighborhood of RT #1 [430, 3058] RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 Cyclase Feature: gene Location: 430-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634-1291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 634-12 91 bp Feature: domain Description: GIIM Note: maturase Location: 1372-1594 bp Feature: domain Description: GIIM Note: maturase Location: 1372 -1594 bp Feature: gene Location: 1812-2171 bp Feature: domain Description: HTH_Tnp_1 Location: 1821-1977 bp Feature: domain Description: HTH_Tnp_1 Location: 182 1-1977 bp Feature: domain Description: HTH_Tnp_1 Location: 1992-2124 bp Feature: domain Description: HTH_Tnp_1 Location: 1992 -2 12 4 bp Feature: gene Location: 2168-3058 bp Feature: domain Description: Cyclase Location: 2396-2966 bp Feature: domain Description: Cyclase Location: 2 396-2 966 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Cyclase (pfam04199)

Seq: PWFP01000184.1 Thioalkalivibrio sp. isolate T1Sed10_3 T1-Sed10-C39960, whole genome shotgun sequence (3373 bp)
Overview 1 RT 1: 678-2740 bp Neighborhood of RT #1 [678, 2892] RVT-CRISPR Cas_Cas1 CRISPR_Cas2 Feature: gene Location: 678-1523 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 885-1485 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 885-1485 bp Feature: gene Location: 1520-2533 bp Feature: domain Description: Cas_Cas1 Location: 1544-2363 bp Feature: domain Description: Cas_Cas1 Location: 1544-23 63 bp Feature: gene Location: 2530-2892 bp Feature: domain Description: CRISPR_Cas2 Location: 2545-2740 bp Feature: domain Description: CRISPR_Cas2 Location: 2545-2740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), CRISPR_Cas2 (pfam09827)