myRT

myRT report for GCA_003554825.1_ASM355482v1

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Seq: PWHI01000253.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C11807, whole genome shotgun sequence (7702 bp)
Overview 1 RT 1: 626-7344 bp Neighborhood of RT #1 [626, 7700] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve PHD1_KDM5A_like Feature: gene Location: 626-1195 bp Feature: gene Location: 1383-2054 bp Feature: gene Location: 2721-7700 bp Feature: domain Description: retropepsin_like Location: 3231-3507 bp Feature: domain Description: retropepsin_like Location: 3231 -3507 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4710-4860 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 471 0-4860 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 5154-5511 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 51 54-551 1 bp Feature: domain Description: Integrase_H2C2 Location: 6072-6237 bp Feature: domain Description: Integrase_H2C2 Location: 6072-6237 bp Feature: domain Description: rve Location: 6294-6621 bp Feature: domain Description: rve Location: 6294-6621 bp Feature: domain Description: PHD1_KDM5A_like Location: 7206-7344 bp Feature: domain Description: PHD1 _KDM5A_like Location: 7206-7344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG17/RVT-UG4/RVT-GII/RVT-UG26(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), PHD1_KDM5A_like (cd15515)

Seq: PWHI01000259.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C15738, whole genome shotgun sequence (6363 bp)
Overview 1 RT 1: 2-4131 bp Neighborhood of RT #1 [2, 4223] RVT-GII GIIM PRK13759 PRK13759 Feature: gene Location: 2-1057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-614 bp Feature: domain Description: GIIM Note: maturase Location: 659-890 bp Feature: domain Description: GIIM Note: maturase Location: 659-890 bp Feature: gene Location: 1185-2639 bp Feature: domain Description: PRK13759 Location: 1212-2631 bp Feature: domain Description: PRK13759 Location: 12 12 -2 631 bp Feature: gene Location: 2772-4223 bp Feature: domain Description: PRK13759 Location: 2781-4131 bp Feature: domain Description: PRK13759 Location: 2 781-4131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK13759 (arylsulfatase; Provisional)

Seq: PWHI01000103.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C21366, whole genome shotgun sequence (5165 bp)
Overview 1 RT 1: 2-4217 bp Neighborhood of RT #1 [2, 4249] group_II_RT_mat RVT-GII AroE D_ribokin_bact Feature: gene Location: 2-133 bp Feature: gene Location: 765-1013 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 882-1008 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 882-1008 bp Feature: gene Location: 1041-2078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1047-1725 bp Feature: gene Location: 2212-3165 bp Feature: domain Description: AroE Location: 2251-3097 bp Feature: domain Description: AroE Location: 2251-3 097 bp Feature: gene Location: 3260-4249 bp Feature: domain Description: D_ribokin_bact Location: 3350-4217 bp Feature: domain Description: D_ribokin_bact Location: 3 3 50-4217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, AroE (COG0169), D_ribokin_bact (TIGR02152)

Seq: PWHI01000431.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C25995, whole genome shotgun sequence (4525 bp)
Overview 1 RT 1: 3-3074 bp Neighborhood of RT #1 [3, 4522] PCIF1_WW RNase_H RVT-GII Feature: gene Location: 3-2681 bp Feature: domain Description: PCIF1_WW Location: 1197-1608 bp Feature: domain Description: PCIF1_WW Location: 1197-1608 bp Feature: domain Description: RNase_H Location: 2028-2421 bp Feature: domain Description: RNase_H Location: 2028-24 21 bp Feature: gene Location: 2810-4522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2894-3074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2894 -3074 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PCIF1_WW (pfam12237), RNase_H (pfam00075), RVT-GII

Seq: PWHI01000085.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C37539, whole genome shotgun sequence (3522 bp)
Overview 1 RT 1: 2-3416 bp Neighborhood of RT #1 [2, 3520] RVT-UG17 RNase_HI_RT_Ty3 Integrase_H2C2 rve PHD1_KDM5A_like Feature: gene Location: 2-3520 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 785-938 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 785 -938 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1232-1583 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1232-15 83 bp Feature: domain Description: Integrase_H2C2 Location: 2156-2306 bp Feature: domain Description: Integrase_H2C2 Location: 215 6-2306 bp Feature: domain Description: rve Location: 2366-2696 bp Feature: domain Description: rve Location: 2366-2696 bp Feature: domain Description: PHD1_KDM5A_like Location: 3278-3416 bp Feature: domain Description: PHD1_KDM5 A_like Location: 3278-3416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), PHD1_KDM5A_like (cd15515)

Seq: PWHI01000356.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C40815, whole genome shotgun sequence (3323 bp)
Overview 1 RT 1: 137-3084 bp Neighborhood of RT #1 [137, 3320] retropepsin_like RVT-UG11 RNase_HI_RT_Ty3 Integrase_H2C2 Feature: gene Location: 137-1915 bp Feature: domain Description: retropepsin_like Location: 665-911 bp Feature: domain Description: retropepsin_like Location: 6 6 5-911 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1709-1856 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1709-1856 bp Feature: gene Location: 1887-3320 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2154-2496 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2154-2496 bp Feature: domain Description: Integrase_H2C2 Location: 2922-3084 bp Feature: domain Description: Integrase_H2C2 Location: 2922-3084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921)

Seq: PWHI01000402.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C48472, whole genome shotgun sequence (2951 bp)
Overview 1 RT 1: 2-2552 bp Neighborhood of RT #1 [2, 2857] retropepsin_like RVT-UG11 RNase_HI_RT_Ty3 Feature: gene Location: 2-175 bp Feature: gene Location: 389-2857 bp Feature: domain Description: retropepsin_like Location: 716-968 bp Feature: domain Description: retropepsin_like Location: 7 16-968 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1637-1883 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1637 -1883 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2207-2552 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 2207 -2552 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11, RNase_HI_RT_Ty3 (cd09274)

Seq: PWHI01000462.1 Clostridiales bacterium isolate T1Sed10_132 T1-Sed10-C55553, whole genome shotgun sequence (2680 bp)
Overview 1 RT 1: 1-2653 bp Neighborhood of RT #1 [1, 2679] L1-EN RVT-CRISPR-like Feature: gene Location: 1-2679 bp Feature: domain Description: L1-EN Location: 370-1102 bp Feature: domain Description: L1-EN Location: 370-1102 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2386-2653 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 238 6-2653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RVT-CRISPR