myRT

myRT report for GCA_003555325.1_ASM355532v1

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Seq: PWGQ01000151.1 Methanosarcinaceae archaeon isolate T1Sed10_164 T1-Sed10-C2631, whole genome shotgun sequence (18550 bp)
Overview 1 RT 1: 1-3299 bp Neighborhood of RT #1 [1, 3299] RVT-GII GIIM HNHc atpB Feature: gene Location: 1-1350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-628 bp Feature: domain Description: GIIM Note: maturase Location: 706-931 bp Feature: domain Description: GIIM Note: maturase Location: 706-931 bp Feature: domain Description: HNHc Note: nucleases Location: 1171-1327 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 71 -1 327 bp Feature: gene Location: 1471-2211 bp Feature: domain Description: atpB Location: 1474-2206 bp Feature: domain Description: atpB Location: 1 474-2206 bp Feature: gene Location: 3060-3299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), atpB (CHL00060)

Seq: PWGQ01000070.1 Methanosarcinaceae archaeon isolate T1Sed10_164 T1-Sed10-C31793, whole genome shotgun sequence (3951 bp)
Overview 1 RT 1: 1284-3935 bp Neighborhood of RT #1 [1284, 3949] INT_RitB_C_like Phage_int_SAM_5 Phage_int_SAM_5 INT_RitA_C_like RVT-GII Feature: gene Location: 1284-2273 bp Feature: domain Description: INT_RitB_C_like Location: 1602-2208 bp Feature: domain Description: INT_RitB_C_like Location: 1602 -2 2 08 bp Feature: gene Location: 2311-3522 bp Feature: domain Description: Phage_int_SAM_5 Location: 2566-2746 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 566-2 746 bp Feature: domain Description: Phage_int_SAM_5 Location: 2785-2902 bp Feature: domain Description: Phage_int_SAM_5 Location: 2 785-2 902 bp Feature: domain Description: INT_RitA_C_like Location: 2968-3496 bp Feature: domain Description: INT_RitA_C_like Location: 2 968-3496 bp Feature: gene Location: 3659-3949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3716-3935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3716-3935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_5 (pfam13102), INT_RitA_C_like (cd01188), RVT-GII