myRT

myRT report for GCA_003556305.1_ASM355630v1

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Seq: PWRG01000240.1 Cyanobacteria bacterium CSSed10_82m CS-Sed10-C154817, whole genome shotgun sequence (2729 bp)
Overview 1 RT 1: 2-2496 bp Neighborhood of RT #1 [2, 2531] umuC RVT-GII KOG4768 HNHc Feature: gene Location: 2-184 bp Feature: domain Description: umuC Location: 47-158 bp Feature: domain Description: umuC Location: 47-1 58 bp Feature: gene Location: 855-2531 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1140-1821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 40-1 821 bp Feature: domain Description: KOG4768 Location: 1974-2127 bp Feature: domain Description: KOG4768 Location: 1 974-21 27 bp Feature: domain Description: HNHc Note: nucleases Location: 2313-2496 bp Feature: domain Description: HNHc Note: nucleases Location: 231 3-2496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HNHc (smart00507)

Seq: PWRG01000010.1 Cyanobacteria bacterium CSSed10_82m CS-Sed10-C3851, whole genome shotgun sequence (22573 bp)
Overview 1 RT 1: 481-7849 bp Neighborhood of RT #1 [481, 7920] TIR_2 SAVED YfmG Avd_like RVT-DGRs YfmG umuC Feature: gene Location: 481-4422 bp Feature: domain Description: TIR_2 Location: 2257-2536 bp Feature: domain Description: TIR_2 Location: 2 2 57-2 536 bp Feature: domain Description: SAVED Location: 2893-3436 bp Feature: domain Description: SAVED Location: 2 893-3436 bp Feature: domain Description: YfmG Location: 3619-4387 bp Feature: domain Description: YfmG Location: 3619-4387 bp Feature: gene Location: 4519-4878 bp Feature: domain Description: Avd_like Location: 4537-4843 bp Feature: domain Description: Avd_like Location: 4537-4843 bp Feature: gene Location: 4862-5998 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5072-5711 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5072 -5711 bp Feature: gene Location: 6319-7140 bp Feature: domain Description: YfmG Location: 6406-7120 bp Feature: domain Description: YfmG Location: 6406-712 0 bp Feature: gene Location: 7237-7920 bp Feature: domain Description: umuC Location: 7249-7849 bp Feature: domain Description: umuC Location: 72 49-7849 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), TIR_2 (pfam13676), SAVED (pfam18145), YfmG (COG1262), RVT-DGRs, umuC (PRK03609)

Seq: PWRG01000221.1 Cyanobacteria bacterium CSSed10_82m CS-Sed10-C5978, whole genome shotgun sequence (18076 bp)
Overview 1 RT 1: 151-3387 bp Neighborhood of RT #1 [151, 3434] Avd_like RVT-DGRs YfmG GT4_PimA-like Feature: gene Location: 151-360 bp Feature: gene Location: 467-850 bp Feature: domain Description: Avd_like Location: 485-791 bp Feature: domain Description: Avd_like Location: 485-791 bp Feature: gene Location: 865-1929 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1075-1714 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1075-1714 bp Feature: gene Location: 1949-2116 bp Feature: domain Description: YfmG Location: 1952-2060 bp Feature: domain Description: YfmG Location: 1952-2060 bp Feature: gene Location: 2274-3434 bp Feature: domain Description: GT4_PimA-like Location: 2280-3387 bp Feature: domain Description: GT4_PimA-like Location: 2280-3 3 87 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), GT4_PimA-like (cd03801), Avd_like (cd16376), RVT-DGRs