myRT

myRT report for GCA_003560295.1_ASM356029v1

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Seq: PWIV01000099.1 Gammaproteobacteria bacterium isolate CSSed10_121 CS-Sed10-C176750, whole genome shotgun sequence (2511 bp)
Overview 1 RT 1: 1-2397 bp Neighborhood of RT #1 [1, 2468] AAAA RVT-GII GIIM Feature: gene Location: 1-801 bp Feature: domain Description: AAAA Location: 28-736 bp Feature: domain Description: AAAA Location: 28-736 bp Feature: gene Location: 1146-2468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1428-2112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 428-21 1 2 bp Feature: domain Description: GIIM Note: maturase Location: 2193-2397 bp Feature: domain Description: GIIM Note: maturase Location: 21 93-2397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AAAA (COG1672)

Seq: PWIV01000200.1 Gammaproteobacteria bacterium isolate CSSed10_121 CS-Sed10-C60845, whole genome shotgun sequence (4871 bp)
Overview 1 RT 1: 699-4492 bp Neighborhood of RT #1 [699, 4635] InsE RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 Feature: gene Location: 699-947 bp Feature: domain Description: InsE Location: 711-909 bp Feature: domain Description: InsE Location: 711-909 bp Feature: gene Location: 958-1098 bp Feature: gene Location: 1722-2984 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1926-2583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192 6-2 583 bp Feature: domain Description: GIIM Note: maturase Location: 2664-2877 bp Feature: domain Description: GIIM Note: maturase Location: 2 664-2 877 bp Feature: gene Location: 3101-3592 bp Feature: domain Description: HTH_Tnp_1 Location: 3107-3263 bp Feature: domain Description: HTH_Tnp_1 Location: 3107-32 63 bp Feature: domain Description: HTH_Tnp_1 Location: 3284-3503 bp Feature: domain Description: HTH_Tnp_1 Location: 32 84-3503 bp Feature: gene Location: 3589-4635 bp Feature: domain Description: HTH_23 Location: 3595-3718 bp Feature: domain Description: HTH_2 3 Location: 3595-3718 bp Feature: domain Description: Tra5 Location: 3796-4492 bp Feature: domain Description: Tra5 Location: 3796-4492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), HTH_23 (pfam13384), Tra5 (COG2801), InsE (COG2963)

Seq: PWIV01000052.1 Gammaproteobacteria bacterium isolate CSSed10_121 CS-Sed10-C63688, whole genome shotgun sequence (4738 bp)
Overview 1 RT 1: 2-3201 bp Neighborhood of RT #1 [2, 3201] RVT-GII GIIM PAS CsgD Feature: gene Location: 2-1126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80-740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80-740 bp Feature: domain Description: GIIM Note: maturase Location: 809-1034 bp Feature: domain Description: GIIM Note: maturase Location: 809-103 4 bp Feature: gene Location: 1358-2485 bp Feature: domain Description: PAS Location: 1751-2231 bp Feature: domain Description: PAS Location: 1751-223 1 bp Feature: domain Description: CsgD Location: 2279-2474 bp Feature: domain Description: CsgD Location: 2279-2474 bp Feature: gene Location: 2605-3201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS (smart00091), CsgD (COG2771), RVT-GII, GIIM (pfam08388)