myRT

myRT report for GCA_003563815.1_ASM356381v1

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Seq: PWTR01000021.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C14112, whole genome shotgun sequence (8919 bp)
Overview 1 RT 1: 2-2633 bp Neighborhood of RT #1 [2, 2633] RVT-UG7 PKc Feature: gene Location: 2-676 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 389-674 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 389-674 bp Feature: gene Location: 679-1890 bp Feature: domain Description: PKc Location: 1165-1837 bp Feature: domain Description: PKc Location: 1 1 65-1 837 bp Feature: gene Location: 2076-2633 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PKc (cd00180)

Seq: PWTR01000310.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C33157, whole genome shotgun sequence (5461 bp)
Overview 1 RT 1: 2-3862 bp Neighborhood of RT #1 [2, 4977] DUF1848 RVT-UG25 Feature: gene Location: 2-490 bp Feature: gene Location: 1153-2112 bp Feature: domain Description: DUF1848 Location: 1183-1972 bp Feature: domain Description: DUF1848 Location: 1183-1972 bp Feature: gene Location: 2128-4977 bp Feature: RT Description: RVT-UG25 Note: UG25 RT Location: 3472-3862 bp Feature: RT Description: RVT-UG2 5 Note: UG2 5 RT Location: 3472 -3862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1848 (pfam08902), RVT-UG25

Seq: PWTR01000460.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C43872, whole genome shotgun sequence (4615 bp)
Overview 1 RT 1: 1-4615 bp Neighborhood of RT #1 [1, 4614] AAA-ATPase_like RVT-GII GIIM INT_RitA_C_like INT_RitB_C_like Feature: gene Location: 1-987 bp Feature: domain Description: AAA-ATPase_like Location: 19-898 bp Feature: domain Description: AAA-ATPase_like Location: 19-898 bp Feature: gene Location: 1460-2365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1469-1856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1469-1856 bp Feature: domain Description: GIIM Note: maturase Location: 1907-2141 bp Feature: domain Description: GIIM Note: maturase Location: 1907-2141 bp Feature: gene Location: 2598-3800 bp Feature: domain Description: INT_RitA_C_like Location: 3246-3774 bp Feature: domain Description: INT_RitA_C_like Location: 3 246-3 774 bp Feature: gene Location: 3940-4614 bp Feature: domain Description: INT_RitB_C_like Location: 4156-4615 bp Feature: domain Description: INT_RitB_C_like Location: 4156-4615 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), RVT-GII, GIIM (pfam08388), INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797)

Seq: PWTR01000234.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C56124, whole genome shotgun sequence (3918 bp)
Overview 1 RT 1: 44-3157 bp Neighborhood of RT #1 [44, 3157] EEP RVT-GII Feature: gene Location: 44-2461 bp Feature: domain Description: EEP Location: 257-884 bp Feature: domain Description: EEP Location: 257-884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1802-2390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1802-2390 bp Feature: gene Location: 2639-3157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT EEP (cl00490), RVT-GII

Seq: PWTR01000099.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C57741, whole genome shotgun sequence (3901 bp)
Overview 1 RT 1: 2-3899 bp Neighborhood of RT #1 [2, 3899] DUF262 DUF1524 RVT-UG9 Feature: gene Location: 2-1705 bp Feature: domain Description: DUF262 Location: 59-728 bp Feature: domain Description: DUF262 Location: 5 9-728 bp Feature: domain Description: DUF1524 Location: 1340-1640 bp Feature: domain Description: DUF15 24 Location: 1340-1640 bp Feature: gene Location: 1819-3531 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2044-2671 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2044-2671 bp Feature: gene Location: 3615-3899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), DUF1524 (pfam07510), RVT-UG9

Seq: PWTR01000599.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C59032, whole genome shotgun sequence (3850 bp)
Overview 1 RT 1: 3-3621 bp Neighborhood of RT #1 [3, 3848] RVT-GII Eco57I TaqI_C Feature: gene Location: 3-245 bp Feature: gene Location: 232-1467 bp Feature: gene Location: 1893-2072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1923-2028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1923-2028 bp Feature: gene Location: 2343-3848 bp Feature: domain Description: Eco57I Location: 2517-2841 bp Feature: domain Description: Eco57I Location: 2517-2841 bp Feature: domain Description: TaqI_C Location: 3180-3621 bp Feature: domain Description: TaqI_C Location: 3180-36 21 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Eco57I (pfam07669), TaqI_C (pfam12950)

Seq: PWTR01000246.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C75893, whole genome shotgun sequence (3310 bp)
Overview 1 RT 1: 267-3309 bp Neighborhood of RT #1 [267, 3309] L1-EN RT_nLTR_like RVT-CRISPR-like Feature: gene Location: 267-947 bp Feature: domain Description: L1-EN Location: 285-909 bp Feature: domain Description: L1-EN Location: 285-909 bp Feature: gene Location: 982-1980 bp Feature: domain Description: RT_nLTR_like Location: 1759-1963 bp Feature: domain Description: RT_nLTR_like Location: 17 59-1963 bp Feature: gene Location: 2002-2916 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2005-2419 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2005-2419 bp Feature: gene Location: 3073-3309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT L1-EN (cd09076), RT_nLTR_like (cd01650), RVT-CRISPR

Seq: PWTR01000404.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C78657, whole genome shotgun sequence (3238 bp)
Overview 1 RT 1: 2-3148 bp Neighborhood of RT #1 [2, 3148] Exo_endo_phos RVT-CRISPR-like Feature: gene Location: 2-2989 bp Feature: domain Description: Exo_endo_phos Location: 5-752 bp Feature: domain Description: Exo_endo_phos Location: 5-752 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1685-2330 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 168 5-2330 bp Feature: gene Location: 3017-3148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Exo_endo_phos (pfam03372), RVT-CRISPR

Seq: PWTR01000319.1 Arc I group archaeon isolate CSSed11_199 CS-Sed11-C92030, whole genome shotgun sequence (2939 bp)
Overview 1 RT 1: 413-2872 bp Neighborhood of RT #1 [413, 2937] RVT-GII GIIM FTCD_C Feature: gene Location: 413-1828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 764-1382 bp Feature: domain Description: GIIM Note: maturase Location: 1436-1661 bp Feature: domain Description: GIIM Note: maturase Location: 1436-1661 bp Feature: gene Location: 2368-2937 bp Feature: domain Description: FTCD_C Location: 2371-2872 bp Feature: domain Description: FTCD_C Location: 2371-2872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FTCD_C (pfam04961)