myRT

myRT report for GCA_003565015.1_ASM356501v1

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Seq: PXDQ01000082.1 PVC group bacterium isolate T3Sed10_340 T3-Sed10-C57864, whole genome shotgun sequence (4434 bp)
Overview 1 RT 1: 1-4413 bp Neighborhood of RT #1 [1, 4433] RVT-GII choice_anch_D choice_anch_D Por_Secre_tail Feature: gene Location: 1-1257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280-904 bp Feature: gene Location: 1887-4433 bp Feature: domain Description: choice_anch_D Location: 2589-2874 bp Feature: domain Description: choice_anch_D Location: 2589-2874 bp Feature: domain Description: choice_anch_D Location: 3822-4092 bp Feature: domain Description: choice_anch_D Location: 3822-4092 bp Feature: domain Description: Por_Secre_tail Location: 4200-4413 bp Feature: domain Description: Por_Secre_tail Location: 4200-441 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, choice_anch_D (NF012200), Por_Secre_tail (TIGR04183)

Seq: PXDQ01000388.1 PVC group bacterium isolate T3Sed10_340 T3-Sed10-C68135, whole genome shotgun sequence (3971 bp)
Overview 1 RT 1: 2984-3752 bp Neighborhood of RT #1 [2984, 3970] RVT-GII Feature: gene Location: 2984-3244 bp Feature: gene Location: 3390-3563 bp Feature: gene Location: 3617-3970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3623-3752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 362 3-3752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PXDQ01000078.1 PVC group bacterium isolate T3Sed10_340 T3-Sed10-C68858, whole genome shotgun sequence (3943 bp)
Overview 1 RT 1: 1066-3941 bp Neighborhood of RT #1 [1066, 3941] RVT-GII GIIM Feature: gene Location: 1066-1392 bp Feature: gene Location: 1662-1955 bp Feature: gene Location: 2060-3325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2276-2891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2276-2891 bp Feature: domain Description: GIIM Note: maturase Location: 2936-3140 bp Feature: domain Description: GIIM Note: maturase Location: 293 6-3 140 bp Feature: gene Location: 3322-3735 bp Feature: gene Location: 3762-3941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PXDQ01000366.1 PVC group bacterium isolate T3Sed10_340 T3-Sed10-C71533, whole genome shotgun sequence (3843 bp)
Overview 1 RT 1: 3-2791 bp Neighborhood of RT #1 [3, 2826] HSP70_NBD ANK Ank_2 RVT-Retrons HSP70_NBD AbrB Feature: gene Location: 3-1151 bp Feature: domain Description: HSP70_NBD Location: 12-417 bp Feature: domain Description: HSP70_NBD Location: 12-4 17 bp Feature: domain Description: ANK Location: 498-741 bp Feature: domain Description: ANK Location: 4 98-74 1 bp Feature: domain Description: Ank_2 Location: 786-966 bp Feature: domain Description: Ank_2 Location: 786-966 bp Feature: gene Location: 1227-2261 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1464-1986 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14 64 -1986 bp Feature: gene Location: 2317-2502 bp Feature: domain Description: HSP70_NBD Location: 2338-2458 bp Feature: domain Description: HSP70_NBD Location: 2338-24 58 bp Feature: gene Location: 2602-2826 bp Feature: domain Description: AbrB Location: 2605-2791 bp Feature: domain Description: AbrB Location: 2605-2791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HSP70_NBD (cd10170), AbrB (pfam05145), ANK (smart00248), Ank_2 (pfam12796)

Seq: PXDQ01000313.1 PVC group bacterium isolate T3Sed10_340 T3-Sed10-C83037, whole genome shotgun sequence (3477 bp)
Overview 1 RT 1: 3-3477 bp Neighborhood of RT #1 [3, 3476] YfmG Avd_like RVT-DGRs Avd_like RVT-DGRs Feature: gene Location: 3-455 bp Feature: domain Description: YfmG Location: 30-450 bp Feature: domain Description: YfmG Location: 30-45 0 bp Feature: gene Location: 356-889 bp Feature: domain Description: Avd_like Location: 539-842 bp Feature: domain Description: Avd_like Location: 5 39-842 bp Feature: gene Location: 1234-2286 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1441-2083 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1441-2083 bp Feature: gene Location: 2494-2832 bp Feature: domain Description: Avd_like Location: 2515-2818 bp Feature: domain Description: Avd_like Location: 25 15 -2818 bp Feature: gene Location: 2865-3032 bp Feature: gene Location: 2829-3476 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3039-3477 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3039-3477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)