myRT

myRT report for GCA_003566675.1_ASM356667v1

Download annotations/find similar RTs

Seq: PXCI01000346.1 Clostridia bacterium isolate T3Sed10_282 T3-Sed10-C109375, whole genome shotgun sequence (2889 bp)
Overview 1 RT 1: 3-2165 bp Neighborhood of RT #1 [3, 2165] RVT-DGRs Avd_like Feature: gene Location: 3-158 bp Feature: gene Location: 201-1352 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 417-1089 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 7-1 089 bp Feature: gene Location: 1343-1789 bp Feature: domain Description: Avd_like Location: 1412-1724 bp Feature: domain Description: Avd_like Location: 1 41 2-1 724 bp Feature: gene Location: 1782-2165 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: PXCI01000208.1 Clostridia bacterium isolate T3Sed10_282 T3-Sed10-C12607, whole genome shotgun sequence (11793 bp)
Overview 1 RT 1: 2-1517 bp Neighborhood of RT #1 [2, 1517] RVT-GII Feature: gene Location: 2-814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302-752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 302 -752 bp Feature: gene Location: 826-1005 bp Feature: gene Location: 1359-1517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PXCI01000335.1 Clostridia bacterium isolate T3Sed10_282 T3-Sed10-C26638, whole genome shotgun sequence (7410 bp)
Overview 1 RT 1: 4353-7311 bp Neighborhood of RT #1 [4353, 7409] DAP2 RVT-GII GIIM Feature: gene Location: 4353-6434 bp Feature: domain Description: DAP2 Location: 4365-6417 bp Feature: domain Description: DAP2 Location: 43 65-6417 bp Feature: gene Location: 6466-6723 bp Feature: gene Location: 6891-7409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6909-7020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6909-7020 bp Feature: domain Description: GIIM Note: maturase Location: 7092-7311 bp Feature: domain Description: GIIM Note: maturase Location: 7092-73 11 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DAP2 (COG1506), RVT-GII, GIIM (pfam08388)

Seq: PXCI01000031.1 Clostridia bacterium isolate T3Sed10_282 T3-Sed10-C31824, whole genome shotgun sequence (6590 bp)
Overview 1 RT 1: 3-4518 bp Neighborhood of RT #1 [3, 4532] RVT-DGRs Avd_like NACHT YfmG Feature: gene Location: 3-173 bp Feature: gene Location: 243-1325 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 456-1098 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 56-1098 bp Feature: gene Location: 1690-2043 bp Feature: domain Description: Avd_like Location: 1714-2026 bp Feature: domain Description: Avd_like Location: 1714 -2026 bp Feature: gene Location: 2094-4532 bp Feature: domain Description: NACHT Location: 2304-2844 bp Feature: domain Description: NACHT Location: 2304 -284 4 bp Feature: domain Description: YfmG Location: 3900-4518 bp Feature: domain Description: YfmG Location: 3900-4 518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), NACHT (pfam05729), YfmG (COG1262), RVT-DGRs

Seq: PXCI01000056.1 Clostridia bacterium isolate T3Sed10_282 T3-Sed10-C38737, whole genome shotgun sequence (5787 bp)
Overview 1 RT 1: 1-4436 bp Neighborhood of RT #1 [1, 4436] HsdM_N HsdM RVT-Retrons HTH_XRE Feature: gene Location: 1-555 bp Feature: domain Description: HsdM_N Location: 136-514 bp Feature: domain Description: HsdM_N Location: 136-5 14 bp Feature: gene Location: 923-2425 bp Feature: domain Description: HsdM Location: 944-2399 bp Feature: domain Description: HsdM Location: 944-2399 bp Feature: gene Location: 2492-3487 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2642-3203 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2642-3203 bp Feature: gene Location: 3465-3770 bp Feature: domain Description: HTH_XRE Location: 3477-3642 bp Feature: domain Description: HTH_XRE Location: 3477-3642 bp Feature: gene Location: 3792-4436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HsdM_N (pfam12161), RVT-Retrons, HTH_XRE (smart00530), HsdM (COG0286)