myRT

myRT report for GCA_003568965.1_Vhalioticoli

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Seq: BCUP01000001.1 Vibrio halioticoli DNA, scaffold: scaffold_contig001, strain: IAM 14596, whole genome shotgun sequence (2597242 bp)
Overview 1 RT 1: 72447-79116 bp Neighborhood of RT #1 [72447, 79116] PRK09920 RVT-UG1 HsdR Feature: gene Location: 72447-73097 bp Feature: domain Description: PRK09920 Location: 72480-73092 bp Feature: domain Description: PRK09920 Location: 72480-73092 bp Feature: gene Location: 73713-74261 bp Feature: gene Location: 74383-78270 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 75088-75610 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 75088-7561 0 bp Feature: gene Location: 78314-78901 bp Feature: domain Description: HsdR Location: 78329-78824 bp Feature: domain Description: HsdR Location: 78329-78824 bp Feature: gene Location: 78952-79116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09920 (acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional), RVT-UG1, HsdR (COG4096)

Seq: BCUP01000005.1 Vibrio halioticoli DNA, scaffold: scaffold_contig005, strain: IAM 14596, whole genome shotgun sequence (19734 bp)
Overview 1 RT 1: 16154-19263 bp Neighborhood of RT #1 [16154, 19352] RVT_N RVT-GII GIIM HTH_XRE Feature: gene Location: 16154-16390 bp Feature: gene Location: 16963-17277 bp Feature: gene Location: 17345-18823 bp Feature: domain Description: RVT_N Location: 17399-17642 bp Feature: domain Description: RVT_N Location: 17399-17642 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17687-18314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17687-18314 bp Feature: domain Description: GIIM Note: maturase Location: 18374-18599 bp Feature: domain Description: GIIM Note: maturase Location: 18374-18599 bp Feature: gene Location: 19044-19352 bp Feature: domain Description: HTH_XRE Location: 19107-19263 bp Feature: domain Description: HTH_XRE Location: 19107-192 63 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_XRE (smart00530)