myRT

myRT report for GCA_003569025.1_ASM356902v1

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Seq: BEGZ01000052.1 Escherichia albertii Hiroshima3582 DNA, contig: Hiroshima3582contig0052, whole genome shotgun sequence (2607 bp)
Overview 1 RT 1: 3-2402 bp Neighborhood of RT #1 [3, 2605] YhhI RVT-GII GIIM DDE_Tnp_1_assoc Feature: gene Location: 3-311 bp Feature: domain Description: YhhI Location: 69-312 bp Feature: domain Description: YhhI Location: 69-31 2 bp Feature: gene Location: 322-1677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604-1288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 604-1 288 bp Feature: domain Description: GIIM Note: maturase Location: 1369-1591 bp Feature: domain Description: GIIM Note: maturase Location: 1 369-1 591 bp Feature: gene Location: 2135-2605 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 2141-2402 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 21 41 -2402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), RVT-GII, GIIM (pfam08388), YhhI (COG5433)

Seq: BEGZ01000330.1 Escherichia albertii Hiroshima3582 DNA, contig: Hiroshima3582contig0330, whole genome shotgun sequence (6168 bp)
Overview 1 RT 1: 57-6167 bp Neighborhood of RT #1 [57, 6166] PinE DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM HNHc LZ_Tnp_IS66 Feature: gene Location: 57-638 bp Feature: domain Description: PinE Location: 60-615 bp Feature: domain Description: PinE Location: 60-615 bp Feature: gene Location: 795-3833 bp Feature: domain Description: DUF4158 Location: 825-1317 bp Feature: domain Description: DUF4158 Location: 82 5-1317 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2565-3732 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2 565-3732 bp Feature: gene Location: 4013-5062 bp Feature: RT Description: RVT_N Location: 4061-4304 bp Feature: RT Description: RVT_N Location: 4061-4304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4349-4991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4349-4991 bp Feature: gene Location: 5173-5682 bp Feature: domain Description: GIIM Note: maturase Location: 5176-5275 bp Feature: domain Description: GIIM Note: maturase Location: 5176-52 75 bp Feature: domain Description: HNHc Note: nucleases Location: 5488-5647 bp Feature: domain Description: HNHc Note: nucleases Location: 5488-5647 bp Feature: gene Location: 5825-6166 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5963-6167 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5963-6167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PinE (COG1961), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526)