myRT

myRT report for GCA_003571975.1_ASM357197v1

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Seq: QXHW01000143.1 Shigella dysenteriae strain DMB SH109 MOD1-SH109_143_length_10639_cov_14.888039, whole genome shotgun sequence (10639 bp)
Overview 1 RT 1: 5664-10626 bp Neighborhood of RT #1 [5664, 10637] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 5664-7250 bp Feature: domain Description: prfC Location: 5682-7248 bp Feature: domain Description: prfC Location: 5682-7248 bp Feature: gene Location: 7470-7730 bp Feature: domain Description: PRK10597 Location: 7473-7713 bp Feature: domain Description: PRK1 0597 Location: 7473-771 3 bp Feature: gene Location: 8090-9694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8381-8972 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8381 -8972 bp Feature: domain Description: TIR_2 Location: 9299-9587 bp Feature: domain Description: TIR_2 Location: 9299-9587 bp Feature: gene Location: 10140-10637 bp Feature: domain Description: Caudo_TAP Location: 10269-10626 bp Feature: domain Description: Caudo_TAP Location: 1 0269-1 0626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: QXHW01000236.1 Shigella dysenteriae strain DMB SH109 MOD1-SH109_236_length_5395_cov_25.591199, whole genome shotgun sequence (5395 bp)
Overview 1 RT 1: 553-2530 bp Neighborhood of RT #1 [553, 2544] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 553-1770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1393 bp Feature: domain Description: GIIM Note: maturase Location: 1471-1693 bp Feature: domain Description: GIIM Note: maturase Location: 1471-1693 bp Feature: gene Location: 1886-2032 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1898-2009 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1898-2 009 bp Feature: gene Location: 2059-2544 bp Feature: domain Description: COG3547 Location: 2077-2530 bp Feature: domain Description: COG3547 Location: 2 077-2 530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: QXHW01000519.1 Shigella dysenteriae strain DMB SH109 MOD1-SH109_519_length_756_cov_28.386591, whole genome shotgun sequence (756 bp)
Overview 1 RT 1: 85-703 bp Neighborhood of RT #1 [85, 732] RVT-GII Feature: gene Location: 85-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 85-703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII