myRT

myRT report for GCA_003572005.1_ASM357200v1

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Seq: QXIC01000203.1 Shigella dysenteriae strain DMB SH20168 MOD1-SH20168_203_length_6253_cov_30.478057, whole genome shotgun sequence (6253 bp)
Overview 1 RT 1: 3710-6131 bp Neighborhood of RT #1 [3710, 6131] COG3547 RVT-GII GIIM Feature: gene Location: 3710-4195 bp Feature: domain Description: COG3547 Location: 3728-4181 bp Feature: domain Description: COG3547 Location: 3728-41 81 bp Feature: gene Location: 4291-4458 bp Feature: gene Location: 4484-5701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4670-5324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4670-5324 bp Feature: domain Description: GIIM Note: maturase Location: 5402-5624 bp Feature: domain Description: GIIM Note: maturase Location: 5402-5624 bp Feature: gene Location: 5712-6131 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: QXIC01000447.1 Shigella dysenteriae strain DMB SH20168 MOD1-SH20168_447_length_756_cov_32.445078, whole genome shotgun sequence (756 bp)
Overview 1 RT 1: 85-703 bp Neighborhood of RT #1 [85, 732] RVT-GII Feature: gene Location: 85-732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QXIC01000088.1 Shigella dysenteriae strain DMB SH20168 MOD1-SH20168_88_length_15916_cov_21.185297, whole genome shotgun sequence (15916 bp)
Overview 1 RT 1: 1847-10251 bp Neighborhood of RT #1 [1847, 10253] phage_tail_N 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 1847-5194 bp Feature: domain Description: phage_tail_N Location: 1850-2249 bp Feature: domain Description: phage_tail_N Location: 1850-2249 bp Feature: domain Description: 34 Location: 3947-4280 bp Feature: domain Description: 3 4 Location: 3 947-4280 bp Feature: domain Description: Collar Location: 4565-4703 bp Feature: domain Description: Collar Location: 4565-4703 bp Feature: domain Description: Phage_fiber Location: 4754-4793 bp Feature: domain Description: Phage_fiber Location: 4754-4793 bp Feature: domain Description: Phage_fiber Location: 4850-4889 bp Feature: domain Description: Phage_fiber Location: 4850-4889 bp Feature: domain Description: Phage_fiber Location: 4997-5036 bp Feature: domain Description: Phage_fiber Location: 4997-503 6 bp Feature: domain Description: Phage_fiber Location: 5042-5075 bp Feature: domain Description: Phage_fiber Location: 5042-5075 bp Feature: gene Location: 5194-5778 bp Feature: domain Description: Caudo_TAP Location: 5410-5767 bp Feature: domain Description: Caudo_TAP Location: 5410-5767 bp Feature: gene Location: 6223-7827 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6514-7105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6514-7105 bp Feature: domain Description: TIR_2 Location: 7432-7720 bp Feature: domain Description: TIR_2 Location: 743 2-7720 bp Feature: gene Location: 8187-8447 bp Feature: domain Description: PRK10597 Location: 8190-8430 bp Feature: domain Description: PRK10597 Location: 8190-843 0 bp Feature: gene Location: 8667-10253 bp Feature: domain Description: prfC Location: 8685-10251 bp Feature: domain Description: prfC Location: 8685-10251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)