myRT

myRT report for GCA_003572115.1_ASM357211v1

Download annotations/find similar RTs

Seq: QXID01000121.1 Shigella dysenteriae strain DMB SH20196 MOD1-SH20196_121_length_12725_cov_43.857537, whole genome shotgun sequence (12725 bp)
Overview 1 RT 1: 2-7060 bp Neighborhood of RT #1 [2, 7062] Phage_fiber_2 34 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 2-2002 bp Feature: domain Description: Phage_fiber_2 Location: 41-161 bp Feature: domain Description: Phage_fiber_2 Location: 41 -1 61 bp Feature: domain Description: 34 Location: 755-1094 bp Feature: domain Description: 34 Location: 755-1 094 bp Feature: domain Description: Collar Location: 1373-1511 bp Feature: domain Description: Collar Location: 1 373-1 51 1 bp Feature: domain Description: Phage_fiber Location: 1562-1601 bp Feature: domain Description: Phage_fiber Location: 1 562-1 601 bp Feature: domain Description: Phage_fiber Location: 1658-1697 bp Feature: domain Description: Phage_fiber Location: 1 658-1 697 bp Feature: domain Description: Phage_fiber Location: 1703-1730 bp Feature: domain Description: Phage_fiber Location: 1 703-1 730 bp Feature: domain Description: Phage_fiber Location: 1805-1844 bp Feature: domain Description: Phage_fiber Location: 1 805-1 844 bp Feature: domain Description: Phage_fiber Location: 1850-1883 bp Feature: domain Description: Phage_fiber Location: 1 850-1 883 bp Feature: gene Location: 2002-2586 bp Feature: domain Description: Caudo_TAP Location: 2218-2575 bp Feature: domain Description: Caudo_TAP Location: 221 8-2575 bp Feature: gene Location: 3032-4636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3323-3914 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3323-391 4 bp Feature: domain Description: TIR_2 Location: 4241-4529 bp Feature: domain Description: TIR_2 Location: 4241 -4529 bp Feature: gene Location: 4996-5256 bp Feature: domain Description: PRK10597 Location: 4999-5239 bp Feature: domain Description: PRK1 0597 Location: 4999-5239 bp Feature: gene Location: 5476-7062 bp Feature: domain Description: prfC Location: 5494-7060 bp Feature: domain Description: prfC Location: 5494-7060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), Phage_fiber_2 (pfam03406), 34 (PHA02584), Collar (pfam07484), Phage_fiber (pfam03335), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: QXID01000167.1 Shigella dysenteriae strain DMB SH20196 MOD1-SH20196_167_length_8156_cov_64.570300, whole genome shotgun sequence (8156 bp)
Overview 1 RT 1: 1729-5056 bp Neighborhood of RT #1 [1729, 5070] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1729-2388 bp Feature: domain Description: PHA02517 Location: 1732-2374 bp Feature: domain Description: PHA02 517 Location: 1732 -2 374 bp Feature: gene Location: 2470-2601 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2482-2575 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 482 -2 575 bp Feature: gene Location: 3163-4296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3265-3919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 65-3919 bp Feature: domain Description: GIIM Note: maturase Location: 3997-4219 bp Feature: domain Description: GIIM Note: maturase Location: 3997-42 19 bp Feature: gene Location: 4412-4558 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4424-4535 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 442 4-4535 bp Feature: gene Location: 4585-5070 bp Feature: domain Description: COG3547 Location: 4603-5056 bp Feature: domain Description: COG3547 Location: 4603-5056 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )