myRT

myRT report for GCA_003572225.1_ASM357222v1

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Seq: QWTI01000309.1 Shigella boydii strain DMB SH20140 MOD1-SH20140_309_length_2866_cov_13.457133, whole genome shotgun sequence (2866 bp)
Overview 1 RT 1: 3-2844 bp Neighborhood of RT #1 [3, 2864] Caudo_TAP RVT-Retrons TIR_2 DinI Feature: gene Location: 3-272 bp Feature: domain Description: Caudo_TAP Location: 6-261 bp Feature: domain Description: Caudo_TAP Location: 6-261 bp Feature: gene Location: 718-2346 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1033-1624 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 033-1 624 bp Feature: domain Description: TIR_2 Location: 1951-2239 bp Feature: domain Description: TIR_2 Location: 1 951 -2239 bp Feature: gene Location: 2518-2679 bp Feature: gene Location: 2682-2864 bp Feature: domain Description: DinI Location: 2685-2844 bp Feature: domain Description: DinI Location: 2685-2844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676)

Seq: QWTI01000338.1 Shigella boydii strain DMB SH20140 MOD1-SH20140_338_length_2338_cov_52.739378, whole genome shotgun sequence (2338 bp)
Overview 1 RT 1: 234-2285 bp Neighborhood of RT #1 [234, 2287] PAP2_acid_phosphatase Tra5 RVT-GII Feature: gene Location: 234-983 bp Feature: domain Description: PAP2_acid_phosphatase Location: 309-963 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 309-963 bp Feature: gene Location: 1358-1579 bp Feature: domain Description: Tra5 Location: 1370-1562 bp Feature: domain Description: Tra5 Location: 1370-1562 bp Feature: gene Location: 1592-2287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892-2285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892 -2 2 85 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397)

Seq: QWTI01000360.1 Shigella boydii strain DMB SH20140 MOD1-SH20140_360_length_1806_cov_40.681896, whole genome shotgun sequence (1806 bp)
Overview 1 RT 1: 627-1683 bp Neighborhood of RT #1 [627, 1760] RVT-GII GIIM Feature: gene Location: 627-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-13 83 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)