myRT

myRT report for GCA_003572235.1_ASM357223v1

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Seq: QWTH01000204.1 Shigella boydii strain DMB SH20139 MOD1-SH20139_204_length_6769_cov_49.641197, whole genome shotgun sequence (6769 bp)
Overview 1 RT 1: 1-3040 bp Neighborhood of RT #1 [1, 3054] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-360 bp Feature: domain Description: PHA02517 Location: 4-358 bp Feature: domain Description: PHA0251 7 Location: 4-358 bp Feature: gene Location: 454-585 bp Feature: domain Description: DDE_Tnp_IS66 Location: 466-559 bp Feature: domain Description: DDE_Tnp_IS66 Location: 466-559 bp Feature: gene Location: 1147-2280 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1249-1903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 249-1 903 bp Feature: domain Description: GIIM Note: maturase Location: 1981-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1 981 -2203 bp Feature: gene Location: 2396-2542 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2408-2519 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2408-251 9 bp Feature: gene Location: 2569-3054 bp Feature: domain Description: COG3547 Location: 2587-3040 bp Feature: domain Description: COG3547 Location: 2587-3040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050)

Seq: QWTH01000323.1 Shigella boydii strain DMB SH20139 MOD1-SH20139_323_length_2339_cov_52.748249, whole genome shotgun sequence (2339 bp)
Overview 1 RT 1: 53-2086 bp Neighborhood of RT #1 [53, 2106] RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 53-748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353-746 bp Feature: gene Location: 761-982 bp Feature: domain Description: Tra5 Location: 773-965 bp Feature: domain Description: Tra5 Location: 773-965 bp Feature: gene Location: 1357-2106 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1432-2086 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1432 -2 086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), RVT-GII, Tra5 (COG2801)