myRT

myRT report for GCA_003572325.1_ASM357232v1

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Seq: QXHH01000127.1 Shigella boydii strain DMB SH135 MOD1-SH135_127_length_10639_cov_15.084278, whole genome shotgun sequence (10639 bp)
Overview 1 RT 1: 5664-10626 bp Neighborhood of RT #1 [5664, 10637] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 5664-7250 bp Feature: domain Description: prfC Location: 5682-7248 bp Feature: domain Description: prfC Location: 5682-7248 bp Feature: gene Location: 7470-7730 bp Feature: domain Description: PRK10597 Location: 7473-7713 bp Feature: domain Description: PRK1 0597 Location: 7473-771 3 bp Feature: gene Location: 8090-9694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8381-8972 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8381 -8972 bp Feature: domain Description: TIR_2 Location: 9299-9587 bp Feature: domain Description: TIR_2 Location: 9299-9587 bp Feature: gene Location: 10140-10637 bp Feature: domain Description: Caudo_TAP Location: 10269-10626 bp Feature: domain Description: Caudo_TAP Location: 1 0269-1 0626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: QXHH01000183.1 Shigella boydii strain DMB SH135 MOD1-SH135_183_length_7969_cov_9.489639, whole genome shotgun sequence (7969 bp)
Overview 1 RT 1: 135-2721 bp Neighborhood of RT #1 [135, 2735] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 135-266 bp Feature: domain Description: DDE_Tnp_IS66 Location: 147-240 bp Feature: domain Description: DDE_Tnp_IS66 Location: 147-2 40 bp Feature: gene Location: 828-1961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1584 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1884 bp Feature: domain Description: GIIM Note: maturase Location: 1662 -1884 bp Feature: gene Location: 2077-2223 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2089-2200 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 089-2 2 00 bp Feature: gene Location: 2250-2735 bp Feature: domain Description: COG3547 Location: 2268-2721 bp Feature: domain Description: COG3547 Location: 2 2 68-2 72 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)