myRT

myRT report for GCA_003572335.1_ASM357233v1

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Seq: QWSG01000132.1 Shigella boydii strain DMB SH132 MOD1-SH132_132_length_11105_cov_144.802805, whole genome shotgun sequence (11105 bp)
Overview 1 RT 1: 5663-10981 bp Neighborhood of RT #1 [5663, 11103] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 5663-7249 bp Feature: domain Description: prfC Location: 5681-7247 bp Feature: domain Description: prfC Location: 5681 -7247 bp Feature: gene Location: 7469-7729 bp Feature: domain Description: PRK10597 Location: 7472-7712 bp Feature: domain Description: PRK1 0597 Location: 7472-771 2 bp Feature: gene Location: 8089-9693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8380-8971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8380-8971 bp Feature: domain Description: TIR_2 Location: 9298-9586 bp Feature: domain Description: TIR_2 Location: 9298-9586 bp Feature: gene Location: 10139-10723 bp Feature: domain Description: Caudo_TAP Location: 10355-10712 bp Feature: domain Description: Caudo_TAP Location: 1 0355-1 071 2 bp Feature: gene Location: 10723-11103 bp Feature: domain Description: Phage_fiber Location: 10759-10798 bp Feature: domain Description: Phage_fiber Location: 1 0759-1 0798 bp Feature: domain Description: Phage_fiber Location: 10804-10831 bp Feature: domain Description: Phage_fiber Location: 1 0804-1 0831 bp Feature: domain Description: Phage_fiber Location: 10906-10945 bp Feature: domain Description: Phage_fiber Location: 1 0906-1 0945 bp Feature: domain Description: Phage_fiber Location: 10951-10981 bp Feature: domain Description: Phage_fiber Location: 1 0951 -1 0981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), Phage_fiber (pfam03335), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: QWSG01000187.1 Shigella boydii strain DMB SH132 MOD1-SH132_187_length_7768_cov_174.063270, whole genome shotgun sequence (7768 bp)
Overview 1 RT 1: 627-2520 bp Neighborhood of RT #1 [627, 2534] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 627-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 9-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: gene Location: 1876-2022 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1888-1999 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1888-1999 bp Feature: gene Location: 2049-2534 bp Feature: domain Description: COG3547 Location: 2067-2520 bp Feature: domain Description: COG3547 Location: 2 067-2 52 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: QWSG01000313.1 Shigella boydii strain DMB SH132 MOD1-SH132_313_length_2338_cov_318.092422, whole genome shotgun sequence (2338 bp)
Overview 1 RT 1: 234-2285 bp Neighborhood of RT #1 [234, 2287] PAP2_acid_phosphatase Tra5 RVT-GII Feature: gene Location: 234-983 bp Feature: domain Description: PAP2_acid_phosphatase Location: 309-963 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 09-963 bp Feature: gene Location: 1358-1579 bp Feature: domain Description: Tra5 Location: 1370-1562 bp Feature: domain Description: Tra5 Location: 13 70-1562 bp Feature: gene Location: 1592-2287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892-2285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892-2285 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397)