myRT

myRT report for GCA_003572485.1_ASM357248v1

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Seq: QWSK01000210.1 Shigella boydii strain DMB SH20008 MOD1-SH20008_210_length_6521_cov_24.335911, whole genome shotgun sequence (6521 bp)
Overview 1 RT 1: 3-2832 bp Neighborhood of RT #1 [3, 2846] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-152 bp Feature: domain Description: PHA02517 Location: 6-150 bp Feature: domain Description: PHA0251 7 Location: 6-1 50 bp Feature: gene Location: 246-377 bp Feature: domain Description: DDE_Tnp_IS66 Location: 258-351 bp Feature: domain Description: DDE_Tnp_IS66 Location: 258-351 bp Feature: gene Location: 855-2072 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 -1 695 bp Feature: domain Description: GIIM Note: maturase Location: 1773-1995 bp Feature: domain Description: GIIM Note: maturase Location: 1 773-1 995 bp Feature: gene Location: 2188-2334 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2200-2311 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2200-231 1 bp Feature: gene Location: 2361-2846 bp Feature: domain Description: COG3547 Location: 2379-2832 bp Feature: domain Description: COG3547 Location: 2379-2832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), DDE_Tnp_IS66 (pfam03050), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QWSK01000312.1 Shigella boydii strain DMB SH20008 MOD1-SH20008_312_length_2390_cov_19.759743, whole genome shotgun sequence (2390 bp)
Overview 1 RT 1: 3-2280 bp Neighborhood of RT #1 [3, 2387] Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 Feature: gene Location: 3-383 bp Feature: domain Description: Phage_fiber Location: 39-78 bp Feature: domain Description: Phage_fiber Location: 39-78 bp Feature: domain Description: Phage_fiber Location: 84-111 bp Feature: domain Description: Phage_fiber Location: 84-111 bp Feature: domain Description: Phage_fiber Location: 186-225 bp Feature: domain Description: Phage_fiber Location: 186-2 2 5 bp Feature: domain Description: Phage_fiber Location: 231-261 bp Feature: domain Description: Phage_fiber Location: 2 31-2 61 bp Feature: gene Location: 383-967 bp Feature: domain Description: Caudo_TAP Location: 599-956 bp Feature: domain Description: Caudo_TAP Location: 599-956 bp Feature: gene Location: 1413-2387 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1416-1665 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1416-1665 bp Feature: domain Description: TIR_2 Location: 1992-2280 bp Feature: domain Description: TIR_2 Location: 1992 -2 2 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), Phage_fiber (pfam03335), Caudo_TAP (pfam02413)

Seq: QWSK01000368.1 Shigella boydii strain DMB SH20008 MOD1-SH20008_368_length_1329_cov_56.007849, whole genome shotgun sequence (1329 bp)
Overview 1 RT 1: 1-1276 bp Neighborhood of RT #1 [1, 1278] PHA02517 RVT-GII Feature: gene Location: 1-570 bp Feature: domain Description: PHA02517 Location: 16-553 bp Feature: domain Description: PHA02517 Location: 16-553 bp Feature: gene Location: 583-1278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883-1276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 883 -1276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: QWSK01000396.1 Shigella boydii strain DMB SH20008 MOD1-SH20008_396_length_1107_cov_13.633080, whole genome shotgun sequence (1107 bp)
Overview 1 RT 1: 3-1031 bp Neighborhood of RT #1 [3, 1031] RVT-Retrons Feature: gene Location: 3-698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 318-696 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 318-696 bp Feature: gene Location: 870-1031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons