myRT

myRT report for GCA_003572635.1_ASM357263v1

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Seq: QWTK01000207.1 Shigella sonnei strain DMB SH20158 MOD1-SH20158_207_length_5796_cov_29.841143, whole genome shotgun sequence (5796 bp)
Overview 1 RT 1: 478-2448 bp Neighborhood of RT #1 [478, 2483] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 478-1167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 679-1 1 41 bp Feature: gene Location: 1182-1709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1188-1332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 88-1 332 bp Feature: domain Description: GIIM Note: maturase Location: 1410-1632 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 0-1 632 bp Feature: gene Location: 1825-1971 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1837-1948 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 837-1 948 bp Feature: gene Location: 1998-2483 bp Feature: domain Description: COG3547 Location: 2016-2448 bp Feature: domain Description: COG3547 Location: 201 6-2448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )

Seq: QWTK01000223.1 Shigella sonnei strain DMB SH20158 MOD1-SH20158_223_length_4994_cov_41.803401, whole genome shotgun sequence (4994 bp)
Overview 1 RT 1: 85-4162 bp Neighborhood of RT #1 [85, 4164] RVT-GII RVT-GII GIIM ushA Feature: gene Location: 85-1212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-1042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 385-1042 bp Feature: gene Location: 1511-2038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517-1661 bp Feature: domain Description: GIIM Note: maturase Location: 1745-1961 bp Feature: domain Description: GIIM Note: maturase Location: 1745-1961 bp Feature: gene Location: 2391-2633 bp Feature: gene Location: 2545-4164 bp Feature: domain Description: ushA Location: 2560-4162 bp Feature: domain Description: ushA Location: 2 560-4162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ushA (PRK09558)

Seq: QWTK01000282.1 Shigella sonnei strain DMB SH20158 MOD1-SH20158_282_length_3254_cov_31.391060, whole genome shotgun sequence (3254 bp)
Overview 1 RT 1: 474-2997 bp Neighborhood of RT #1 [474, 3146] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE Feature: gene Location: 474-695 bp Feature: gene Location: 971-1753 bp Feature: domain Description: DDE_Tnp_1 Location: 977-1685 bp Feature: domain Description: DDE_Tnp_1 Location: 977-1685 bp Feature: gene Location: 1779-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1887-1977 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1887-1977 bp Feature: gene Location: 2043-2399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2052-2373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2052-23 73 bp Feature: gene Location: 2493-3146 bp Feature: domain Description: HTH_23 Location: 2586-2673 bp Feature: domain Description: HTH_23 Location: 2586-2673 bp Feature: domain Description: InsE Location: 2802-2997 bp Feature: domain Description: InsE Location: 2802-2997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963)