myRT

myRT report for GCA_003572825.1_ASM357282v1

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Seq: QWTW01000117.1 Shigella boydii strain DMB SH20247 MOD1-SH20247_117_length_12917_cov_45.822267, whole genome shotgun sequence (12917 bp)
Overview 1 RT 1: 5664-12796 bp Neighborhood of RT #1 [5664, 12915] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Phage_fiber_2 Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 5664-7250 bp Feature: domain Description: prfC Location: 5682-7248 bp Feature: domain Description: prfC Location: 5682-7248 bp Feature: gene Location: 7470-7730 bp Feature: domain Description: PRK10597 Location: 7473-7713 bp Feature: domain Description: PRK1 0597 Location: 7473-771 3 bp Feature: gene Location: 8090-9694 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8381-8972 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8381 -8972 bp Feature: domain Description: TIR_2 Location: 9299-9587 bp Feature: domain Description: TIR_2 Location: 9299-9587 bp Feature: gene Location: 10139-10723 bp Feature: domain Description: Caudo_TAP Location: 10355-10712 bp Feature: domain Description: Caudo_TAP Location: 1 0355-1 071 2 bp Feature: gene Location: 10723-12915 bp Feature: domain Description: Phage_fiber_2 Location: 10954-11074 bp Feature: domain Description: Phage_fiber_2 Location: 1 0954-1 1 074 bp Feature: domain Description: Collar Location: 12286-12424 bp Feature: domain Description: Collar Location: 1 2286-1 2424 bp Feature: domain Description: Phage_fiber Location: 12475-12514 bp Feature: domain Description: Phage_fiber Location: 1 2475-1 251 4 bp Feature: domain Description: Phage_fiber Location: 12571-12610 bp Feature: domain Description: Phage_fiber Location: 1 2571 -1 261 0 bp Feature: domain Description: Phage_fiber Location: 12616-12643 bp Feature: domain Description: Phage_fiber Location: 1 261 6-1 2643 bp Feature: domain Description: Phage_fiber Location: 12718-12757 bp Feature: domain Description: Phage_fiber Location: 1 271 8-1 2757 bp Feature: domain Description: Phage_fiber Location: 12763-12796 bp Feature: domain Description: Phage_fiber Location: 1 2763-1 2796 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), Phage_fiber_2 (pfam03406), Collar (pfam07484), Phage_fiber (pfam03335), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: QWTW01000201.1 Shigella boydii strain DMB SH20247 MOD1-SH20247_201_length_6980_cov_114.155668, whole genome shotgun sequence (6980 bp)
Overview 1 RT 1: 627-2520 bp Neighborhood of RT #1 [627, 2534] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 627-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 9-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: gene Location: 1876-2022 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1888-1999 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1888-1999 bp Feature: gene Location: 2049-2534 bp Feature: domain Description: COG3547 Location: 2067-2520 bp Feature: domain Description: COG3547 Location: 2 067-2 52 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)