myRT

myRT report for GCA_003572845.1_ASM357284v1

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Seq: QWTR01000183.1 Shigella flexneri strain DMB SH20173 MOD1-SH20173_183_length_5332_cov_225.639947, whole genome shotgun sequence (5332 bp)
Overview 1 RT 1: 2402-5103 bp Neighborhood of RT #1 [2402, 5123] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2402-2557 bp Feature: gene Location: 2583-2909 bp Feature: domain Description: GIIM Note: maturase Location: 2616-2835 bp Feature: domain Description: GIIM Note: maturase Location: 261 6-2835 bp Feature: gene Location: 2962-3765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3262-3757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3262-3757 bp Feature: gene Location: 3778-3978 bp Feature: domain Description: Tra5 Location: 3787-3961 bp Feature: domain Description: Tra5 Location: 3787-3961 bp Feature: gene Location: 4374-5123 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4449-5103 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4449-51 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: QWTR01000262.1 Shigella flexneri strain DMB SH20173 MOD1-SH20173_262_length_1515_cov_170.144521, whole genome shotgun sequence (1515 bp)
Overview 1 RT 1: 3-1368 bp Neighborhood of RT #1 [3, 1368] RVT-GII Feature: gene Location: 3-890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105-759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 105-759 bp Feature: gene Location: 985-1368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: QWTR01000034.1 Shigella flexneri strain DMB SH20173 MOD1-SH20173_34_length_35575_cov_83.604420, whole genome shotgun sequence (35575 bp)
Overview 1 RT 1: 712-7079 bp Neighborhood of RT #1 [712, 7081] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 712-2235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: domain Description: GIIM Note: maturase Location: 1792-1990 bp Feature: gene Location: 2412-2798 bp Feature: domain Description: PHA02517 Location: 2415-2796 bp Feature: domain Description: PHA02517 Location: 2415-2796 bp Feature: gene Location: 2963-7081 bp Feature: domain Description: ESPR Location: 2966-3035 bp Feature: domain Description: ESPR Location: 2966-3 03 5 bp Feature: domain Description: Peptidase_S6 Location: 3116-5288 bp Feature: domain Description: Peptidase_S6 Location: 3 116-5288 bp Feature: domain Description: autotrans_barl Location: 5852-7079 bp Feature: domain Description: autotrans_barl Location: 5852-7079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)