myRT

myRT report for GCA_003572995.1_ASM357299v1

Download annotations/find similar RTs

Seq: QWSS01000138.1 Shigella dysenteriae strain DMB SH20028 MOD1-SH20028_138_length_9931_cov_32.356521, whole genome shotgun sequence (9931 bp)
Overview 1 RT 1: 77-3356 bp Neighborhood of RT #1 [77, 3361] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE PRK08943 Feature: gene Location: 77-835 bp Feature: domain Description: DDE_Tnp_1 Location: 83-791 bp Feature: domain Description: DDE_Tnp_1 Location: 83-791 bp Feature: gene Location: 861-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969-1059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969-1 059 bp Feature: gene Location: 1125-1433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1134-1425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 34-1 425 bp Feature: gene Location: 1575-2228 bp Feature: domain Description: HTH_23 Location: 1668-1755 bp Feature: domain Description: HTH_23 Location: 1 668-1 755 bp Feature: domain Description: InsE Location: 1887-2079 bp Feature: domain Description: InsE Location: 1 887-2079 bp Feature: gene Location: 2417-3361 bp Feature: domain Description: PRK08943 Location: 2420-3356 bp Feature: domain Description: PRK08943 Location: 2420-3356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated)

Seq: QWSS01000001.1 Shigella dysenteriae strain DMB SH20028 MOD1-SH20028_1_length_59534_cov_46.467274, whole genome shotgun sequence (59534 bp)
Overview 1 RT 1: 39526-42630 bp Neighborhood of RT #1 [39526, 42635] dut slmA RVT-Retrons pyrE Feature: gene Location: 39526-39984 bp Feature: domain Description: dut Location: 39532-39979 bp Feature: domain Description: dut Location: 39532 -39979 bp Feature: gene Location: 40091-40687 bp Feature: domain Description: slmA Location: 40097-40673 bp Feature: domain Description: slmA Location: 40097-40673 bp Feature: gene Location: 41016-41525 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41022-41517 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4102 2 -41517 bp Feature: gene Location: 41568-41846 bp Feature: gene Location: 41979-42635 bp Feature: domain Description: pyrE Location: 41997-42630 bp Feature: domain Description: pyrE Location: 41997-42 630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: QWSS01000220.1 Shigella dysenteriae strain DMB SH20028 MOD1-SH20028_220_length_6344_cov_38.555255, whole genome shotgun sequence (6344 bp)
Overview 1 RT 1: 538-2530 bp Neighborhood of RT #1 [538, 2544] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 538-1770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 739-1393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 9-13 93 bp Feature: domain Description: GIIM Note: maturase Location: 1471-1693 bp Feature: domain Description: GIIM Note: maturase Location: 1471-1693 bp Feature: gene Location: 1886-2032 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1898-2009 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1898-2009 bp Feature: gene Location: 2059-2544 bp Feature: domain Description: COG3547 Location: 2077-2530 bp Feature: domain Description: COG3 547 Location: 2077-253 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )