myRT

myRT report for GCA_003573065.1_ASM357306v1

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Seq: QWTT01000127.1 Shigella dysenteriae strain DMB SH20191 MOD1-SH20191_127_length_9792_cov_16.534764, whole genome shotgun sequence (9792 bp)
Overview 1 RT 1: 77-3356 bp Neighborhood of RT #1 [77, 3361] DDE_Tnp_1 RVT-GII RVT-GII HTH_23 InsE PRK08943 Feature: gene Location: 77-835 bp Feature: domain Description: DDE_Tnp_1 Location: 83-791 bp Feature: domain Description: DDE_Tnp_1 Location: 83-791 bp Feature: gene Location: 861-1064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969-1059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 969-1 059 bp Feature: gene Location: 1125-1433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1134-1425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 34-1 425 bp Feature: gene Location: 1575-2228 bp Feature: domain Description: HTH_23 Location: 1668-1755 bp Feature: domain Description: HTH_23 Location: 1 668-1 755 bp Feature: domain Description: InsE Location: 1887-2079 bp Feature: domain Description: InsE Location: 1 887-2079 bp Feature: gene Location: 2417-3361 bp Feature: domain Description: PRK08943 Location: 2420-3356 bp Feature: domain Description: PRK08943 Location: 2420-3356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, HTH_23 (pfam13384), InsE (COG2963), PRK08943 (lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated)

Seq: QWTT01000001.1 Shigella dysenteriae strain DMB SH20191 MOD1-SH20191_1_length_59440_cov_27.992220, whole genome shotgun sequence (59440 bp)
Overview 1 RT 1: 39432-42536 bp Neighborhood of RT #1 [39432, 42541] dut slmA RVT-Retrons pyrE Feature: gene Location: 39432-39890 bp Feature: domain Description: dut Location: 39438-39885 bp Feature: domain Description: dut Location: 39438-39885 bp Feature: gene Location: 39997-40593 bp Feature: domain Description: slmA Location: 40003-40579 bp Feature: domain Description: slmA Location: 40003-40579 bp Feature: gene Location: 40922-41431 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 40928-41423 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4092 8-4142 3 bp Feature: gene Location: 41474-41752 bp Feature: gene Location: 41885-42541 bp Feature: domain Description: pyrE Location: 41903-42536 bp Feature: domain Description: pyrE Location: 41903-42 536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336)

Seq: QWTT01000247.1 Shigella dysenteriae strain DMB SH20191 MOD1-SH20191_247_length_5395_cov_16.616292, whole genome shotgun sequence (5395 bp)
Overview 1 RT 1: 2852-5257 bp Neighborhood of RT #1 [2852, 5257] COG3547 RVT-GII GIIM Feature: gene Location: 2852-3337 bp Feature: domain Description: COG3547 Location: 2870-3323 bp Feature: domain Description: COG3 547 Location: 2870-3 3 23 bp Feature: gene Location: 3433-3600 bp Feature: gene Location: 3626-4858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3827-4481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 827-4481 bp Feature: domain Description: GIIM Note: maturase Location: 4559-4781 bp Feature: domain Description: GIIM Note: maturase Location: 4559-4781 bp Feature: gene Location: 4853-5257 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)