myRT

myRT report for GCA_003573285.1_ASM357328v1

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Seq: QWTX01000144.1 Shigella boydii strain DMB SH20248 MOD1-SH20248_144_length_10139_cov_56.457755, whole genome shotgun sequence (10139 bp)
Overview 1 RT 1: 5663-9586 bp Neighborhood of RT #1 [5663, 9693] prfC PRK10597 RVT-Retrons TIR_2 Feature: gene Location: 5663-7249 bp Feature: domain Description: prfC Location: 5681-7247 bp Feature: domain Description: prfC Location: 5681 -7247 bp Feature: gene Location: 7469-7729 bp Feature: domain Description: PRK10597 Location: 7472-7712 bp Feature: domain Description: PRK1 0597 Location: 7472-771 2 bp Feature: gene Location: 8089-9693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8380-8971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8380-8971 bp Feature: domain Description: TIR_2 Location: 9298-9586 bp Feature: domain Description: TIR_2 Location: 9298-9586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: QWTX01000201.1 Shigella boydii strain DMB SH20248 MOD1-SH20248_201_length_6980_cov_306.519567, whole genome shotgun sequence (6980 bp)
Overview 1 RT 1: 627-2520 bp Neighborhood of RT #1 [627, 2534] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 627-1760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 9-1383 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1461-1683 bp Feature: gene Location: 1876-2022 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1888-1999 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1888-1999 bp Feature: gene Location: 2049-2534 bp Feature: domain Description: COG3547 Location: 2067-2520 bp Feature: domain Description: COG3547 Location: 2 067-2 52 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: QWTX01000322.1 Shigella boydii strain DMB SH20248 MOD1-SH20248_322_length_2338_cov_351.575996, whole genome shotgun sequence (2338 bp)
Overview 1 RT 1: 52-2085 bp Neighborhood of RT #1 [52, 2105] RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 52-747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 52-745 bp Feature: gene Location: 760-981 bp Feature: domain Description: Tra5 Location: 772-964 bp Feature: domain Description: Tra5 Location: 772-964 bp Feature: gene Location: 1356-2105 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1431-2085 bp Feature: domain Description: PAP2_acid_phosphatase Location: 143 1-2085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), RVT-GII, Tra5 (COG2801)