myRT

myRT report for GCA_003573315.1_ASM357331v1

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Seq: QWTP01000117.1 Shigella flexneri strain DMB SH20170 MOD1-SH20170_117_length_11937_cov_295.183555, whole genome shotgun sequence (11937 bp)
Overview 1 RT 1: 543-2000 bp Neighborhood of RT #1 [543, 2023] RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 543-1514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 729-1 383 bp Feature: gene Location: 1450-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1684 bp Feature: domain Description: GIIM Note: maturase Location: 1 468-1 684 bp Feature: gene Location: 1877-2023 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1889-2000 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 889-2000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), RVT-GII

Seq: QWTP01000171.1 Shigella flexneri strain DMB SH20170 MOD1-SH20170_171_length_6110_cov_337.427415, whole genome shotgun sequence (6110 bp)
Overview 1 RT 1: 1988-5874 bp Neighborhood of RT #1 [1988, 5894] RVT-GII GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 1988-2230 bp Feature: gene Location: 2402-2557 bp Feature: gene Location: 2583-3110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2589-2733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 589-2 733 bp Feature: domain Description: GIIM Note: maturase Location: 2817-3033 bp Feature: domain Description: GIIM Note: maturase Location: 2 817-3033 bp Feature: gene Location: 3120-3392 bp Feature: gene Location: 3409-4536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3709-4366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3709-4366 bp Feature: gene Location: 4549-4749 bp Feature: domain Description: Tra5 Location: 4558-4732 bp Feature: domain Description: Tra5 Location: 4558-4732 bp Feature: gene Location: 5145-5894 bp Feature: domain Description: PAP2_acid_phosphatase Location: 5220-5874 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 52 2 0-5874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: QWTP01000236.1 Shigella flexneri strain DMB SH20170 MOD1-SH20170_236_length_2392_cov_137.762516, whole genome shotgun sequence (2392 bp)
Overview 1 RT 1: 158-2346 bp Neighborhood of RT #1 [158, 2346] RVT-GII GIIM Feature: gene Location: 158-1681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 1-1163 bp Feature: domain Description: GIIM Note: maturase Location: 1238-1436 bp Feature: domain Description: GIIM Note: maturase Location: 123 8-143 6 bp Feature: gene Location: 1975-2346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)