myRT

myRT report for GCA_003573425.1_ASM357342v1

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Seq: QWTG01000137.1 Shigella boydii strain DMB SH20138 MOD1-SH20138_137_length_10410_cov_16.033221, whole genome shotgun sequence (10410 bp)
Overview 1 RT 1: 5663-10397 bp Neighborhood of RT #1 [5663, 10408] prfC PRK10597 RVT-Retrons TIR_2 Caudo_TAP Feature: gene Location: 5663-7249 bp Feature: domain Description: prfC Location: 5681-7247 bp Feature: domain Description: prfC Location: 5681 -7247 bp Feature: gene Location: 7469-7729 bp Feature: domain Description: PRK10597 Location: 7472-7712 bp Feature: domain Description: PRK1 0597 Location: 7472-771 2 bp Feature: gene Location: 8089-9693 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8380-8971 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8380-8971 bp Feature: domain Description: TIR_2 Location: 9298-9586 bp Feature: domain Description: TIR_2 Location: 9298-9586 bp Feature: gene Location: 10139-10408 bp Feature: domain Description: Caudo_TAP Location: 10142-10397 bp Feature: domain Description: Caudo_TAP Location: 1 01 42-1 0397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Caudo_TAP (pfam02413), prfC (TIGR00503), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-Retrons, TIR_2 (pfam13676)

Seq: QWTG01000340.1 Shigella boydii strain DMB SH20138 MOD1-SH20138_340_length_2405_cov_22.084681, whole genome shotgun sequence (2405 bp)
Overview 1 RT 1: 135-2402 bp Neighborhood of RT #1 [135, 2402] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C Feature: gene Location: 135-266 bp Feature: domain Description: DDE_Tnp_IS66 Location: 147-240 bp Feature: domain Description: DDE_Tnp_IS66 Location: 147-2 40 bp Feature: gene Location: 828-1961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1584 bp Feature: domain Description: GIIM Note: maturase Location: 1662-1884 bp Feature: domain Description: GIIM Note: maturase Location: 1662 -1884 bp Feature: gene Location: 2077-2223 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2089-2200 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 089-2 2 00 bp Feature: gene Location: 2250-2402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: QWTG01000343.1 Shigella boydii strain DMB SH20138 MOD1-SH20138_343_length_2338_cov_38.029347, whole genome shotgun sequence (2338 bp)
Overview 1 RT 1: 52-2085 bp Neighborhood of RT #1 [52, 2105] RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 52-747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352-745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 52-745 bp Feature: gene Location: 760-981 bp Feature: domain Description: Tra5 Location: 772-964 bp Feature: domain Description: Tra5 Location: 772-964 bp Feature: gene Location: 1356-2105 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1431-2085 bp Feature: domain Description: PAP2_acid_phosphatase Location: 143 1-2085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), RVT-GII, Tra5 (COG2801)