myRT

myRT report for GCA_003576975.1_ASM357697v1

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Seq: QEVD01000485.1 Candidate division KSB1 bacterium isolate KSB J3_scaffold_16300, whole genome shotgun sequence (5540 bp)
Overview 1 RT 1: 3206-5458 bp Neighborhood of RT #1 [3206, 5538] FadM RVT-DGRs YfmG Avd_like Feature: gene Location: 3206-3478 bp Feature: gene Location: 3485-3922 bp Feature: domain Description: FadM Location: 3509-3908 bp Feature: domain Description: FadM Location: 3509-3908 bp Feature: gene Location: 3923-4954 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4112-4757 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 41 1 2-4757 bp Feature: gene Location: 4986-5366 bp Feature: domain Description: YfmG Location: 5064-5190 bp Feature: domain Description: YfmG Location: 5064-51 90 bp Feature: gene Location: 5392-5538 bp Feature: domain Description: Avd_like Location: 5395-5458 bp Feature: domain Description: Avd_like Location: 5395-5458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FadM (COG0824), RVT-DGRs, YfmG (COG1262), Avd_like (cd16376)

Seq: QEVD01000051.1 Candidate division KSB1 bacterium isolate KSB J3_scaffold_2514, whole genome shotgun sequence (25828 bp)
Overview 1 RT 1: 1-1925 bp Neighborhood of RT #1 [1, 1925] RVT-DGRs Avd_like Feature: gene Location: 1-162 bp Feature: gene Location: 253-1353 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 463-1102 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 463-1102 bp Feature: gene Location: 1383-1745 bp Feature: domain Description: Avd_like Location: 1407-1701 bp Feature: domain Description: Avd_like Location: 1407-1701 bp Feature: gene Location: 1737-1925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)

Seq: QEVD01000159.1 Candidate division KSB1 bacterium isolate KSB J3_scaffold_5085, whole genome shotgun sequence (31788 bp)
Overview 1 RT 1: 6979-12232 bp Neighborhood of RT #1 [6979, 12243] T3SC_YbjN-like_1 CbpA RVT-UG7 PRK03612 DUF350 DUF350 DUF350 DUF350 Feature: gene Location: 6979-7590 bp Feature: domain Description: T3SC_YbjN-like_1 Location: 7123-7357 bp Feature: domain Description: T3 SC_YbjN-like_1 Location: 7123 -73 57 bp Feature: gene Location: 7610-7789 bp Feature: domain Description: CbpA Location: 7628-7766 bp Feature: domain Description: CbpA Location: 7628-7766 bp Feature: gene Location: 8296-9654 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 8701-9103 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 8701-9103 bp Feature: gene Location: 9714-11312 bp Feature: domain Description: PRK03612 Location: 9777-11304 bp Feature: domain Description: PRK03 612 Location: 9777-113 04 bp Feature: gene Location: 11401-12243 bp Feature: domain Description: DUF350 Location: 11437-11593 bp Feature: domain Description: DUF3 50 Location: 1143 7-11593 bp Feature: domain Description: DUF350 Location: 11653-11821 bp Feature: domain Description: DUF3 50 Location: 11653 -11821 bp Feature: domain Description: DUF350 Location: 11863-12016 bp Feature: domain Description: DUF3 50 Location: 11863 -12016 bp Feature: domain Description: DUF350 Location: 12067-12232 bp Feature: domain Description: DUF3 50 Location: 12067-1223 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T3SC_YbjN-like_1 (cd17036), CbpA (COG2214), RVT-UG7, PRK03612 (polyamine aminopropyltransferase), DUF350 (pfam03994)

Seq: QEVD01000004.1 Candidate division KSB1 bacterium isolate KSB J3_scaffold_660, whole genome shotgun sequence (44371 bp)
Overview 1 RT 1: 17563-21567 bp Neighborhood of RT #1 [17563, 21653] DDE_5 RVT-GII GIIM HTH_Tnp_Tc3_2 DDE_3 Feature: gene Location: 17563-18930 bp Feature: domain Description: DDE_5 Location: 17779-18253 bp Feature: domain Description: DDE_5 Location: 17779-18253 bp Feature: gene Location: 19227-19409 bp Feature: gene Location: 19508-20881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19886-20504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19886-20504 bp Feature: domain Description: GIIM Note: maturase Location: 20546-20750 bp Feature: domain Description: GIIM Note: maturase Location: 2054 6-20750 bp Feature: gene Location: 20927-21157 bp Feature: domain Description: HTH_Tnp_Tc3_2 Location: 20936-21065 bp Feature: domain Description: HTH_Tnp_Tc3_2 Location: 20936-21065 bp Feature: gene Location: 21180-21653 bp Feature: domain Description: DDE_3 Location: 21186-21567 bp Feature: domain Description: DDE_3 Location: 21186-21567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, GIIM (pfam08388), HTH_Tnp_Tc3_2 (pfam01498), DDE_3 (pfam13358)