myRT

myRT report for GCA_003577195.1_ASM357719v1

Download annotations/find similar RTs

Seq: QEUK01000039.1 Candidatus Brocadia sp. isolate AMX2 J3_scaffold_1774, whole genome shotgun sequence (37206 bp)
Overview 1 RT 1: 8858-13154 bp Neighborhood of RT #1 [8858, 13154] RVT-GII GIIM Feature: gene Location: 8858-9919 bp Feature: gene Location: 10509-10637 bp Feature: gene Location: 10838-12136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11123-11762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 23-1 1 762 bp Feature: domain Description: GIIM Note: maturase Location: 11843-12053 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 843-1 2053 bp Feature: gene Location: 12511-12663 bp Feature: gene Location: 12840-13154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QEUK01000226.1 Candidatus Brocadia sp. isolate AMX2 J3_scaffold_25547, whole genome shotgun sequence (2470 bp)
Overview 1 RT 1: 1-2363 bp Neighborhood of RT #1 [1, 2363] RVT-GII GIIM Feature: gene Location: 1-171 bp Feature: gene Location: 658-2025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009-1645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1009-1645 bp Feature: domain Description: GIIM Note: maturase Location: 1723-1939 bp Feature: domain Description: GIIM Note: maturase Location: 172 3-1939 bp Feature: gene Location: 2181-2363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QEUK01000089.1 Candidatus Brocadia sp. isolate AMX2 J3_scaffold_4549, whole genome shotgun sequence (11533 bp)
Overview 1 RT 1: 2467-8028 bp Neighborhood of RT #1 [2467, 8132] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III YbbK YbgA Dehyd-heme_bind Dehyd-heme_bind Feature: gene Location: 2467-2634 bp Feature: domain Description: Cas2_I_II_III Location: 2488-2632 bp Feature: domain Description: Cas2_I_II_III Location: 2488-263 2 bp Feature: gene Location: 2887-3030 bp Feature: gene Location: 3076-6126 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4384-5080 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 43 84-5080 bp Feature: domain Description: Cas1_I-II-III Location: 5161-6037 bp Feature: domain Description: Cas1_I-II-III Location: 5161-603 7 bp Feature: gene Location: 6170-7207 bp Feature: domain Description: YbbK Location: 6272-6722 bp Feature: domain Description: YbbK Location: 6272-6722 bp Feature: domain Description: YbgA Location: 6728-7196 bp Feature: domain Description: YbgA Location: 6728-7196 bp Feature: gene Location: 7413-8132 bp Feature: domain Description: Dehyd-heme_bind Location: 7521-7830 bp Feature: domain Description: Dehyd-heme_bind Location: 7521-783 0 bp Feature: domain Description: Dehyd-heme_bind Location: 7893-8028 bp Feature: domain Description: Dehyd-heme_bind Location: 7893 -8028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), YbbK (COG1683), YbgA (COG3272), Dehyd-heme_bind (pfam09098)

Seq: QEUK01000091.1 Candidatus Brocadia sp. isolate AMX2 J3_scaffold_4690, whole genome shotgun sequence (16772 bp)
Overview 1 RT 1: 3-3359 bp Neighborhood of RT #1 [3, 3373] RVT-GII RVT-GII GIIM PRK09604 Feature: gene Location: 3-209 bp Feature: gene Location: 266-928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614-908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614 -908 bp Feature: gene Location: 921-1580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 933-1227 bp Feature: domain Description: GIIM Note: maturase Location: 1305-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1305-1500 bp Feature: gene Location: 2027-2290 bp Feature: gene Location: 2558-3373 bp Feature: domain Description: PRK09604 Location: 2582-3359 bp Feature: domain Description: PRK09604 Location: 2582-3359 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09604 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD)

Seq: QEUK01000139.1 Candidatus Brocadia sp. isolate AMX2 J3_scaffold_6856, whole genome shotgun sequence (8109 bp)
Overview 1 RT 1: 1055-5738 bp Neighborhood of RT #1 [1055, 5738] BioF Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Feature: gene Location: 1055-2239 bp Feature: domain Description: BioF Location: 1076-2195 bp Feature: domain Description: BioF Location: 1076-2195 bp Feature: gene Location: 2331-2606 bp Feature: domain Description: Cas2_I_II_III Location: 2340-2568 bp Feature: domain Description: Cas2_I_II_III Location: 2340-25 68 bp Feature: gene Location: 2694-5048 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2898-3519 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2898-35 19 bp Feature: domain Description: Cas1_I-II-III Location: 4032-5010 bp Feature: domain Description: Cas1_I-II-III Location: 4032-5 010 bp Feature: gene Location: 5097-5357 bp Feature: gene Location: 5541-5738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BioF (COG0156), Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: QEUK01000006.1 Candidatus Brocadia sp. isolate AMX2 J3_scaffold_778, whole genome shotgun sequence (62700 bp)
Overview 1 RT 1: 86-3291 bp Neighborhood of RT #1 [86, 3929] RVT-GII GIIM PadR NapH Feature: gene Location: 86-241 bp Feature: gene Location: 500-1675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 785-1424 bp Feature: domain Description: GIIM Note: maturase Location: 1505-1637 bp Feature: domain Description: GIIM Note: maturase Location: 1505-16 37 bp Feature: gene Location: 2191-2514 bp Feature: domain Description: PadR Location: 2254-2458 bp Feature: domain Description: PadR Location: 2254-2458 bp Feature: gene Location: 2511-3929 bp Feature: domain Description: NapH Location: 2706-3291 bp Feature: domain Description: NapH Location: 2706 -3291 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PadR (pfam03551), NapH (COG0348)