myRT

myRT report for GCA_003577215.1_ASM357721v1

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Seq: QEUJ01000046.1 Candidatus Brocadia sp. isolate AMX1 J3_scaffold_1750, whole genome shotgun sequence (28002 bp)
Overview 1 RT 1: 24967-27832 bp Neighborhood of RT #1 [24967, 27840] RVT-CRISPR-like GxxExxY Feature: gene Location: 24967-25743 bp Feature: gene Location: 25755-26534 bp Feature: gene Location: 26534-27478 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26723-27320 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 26723-27320 bp Feature: gene Location: 27478-27840 bp Feature: domain Description: GxxExxY Location: 27490-27832 bp Feature: domain Description: GxxExxY Location: 27490-27832 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GxxExxY (TIGR04256)

Seq: QEUJ01000049.1 Candidatus Brocadia sp. isolate AMX1 J3_scaffold_1894, whole genome shotgun sequence (45515 bp)
Overview 1 RT 1: 19552-24147 bp Neighborhood of RT #1 [19552, 24147] CcmA CcmA RVT-CRISPR Cas1_I-II-III CRISPR_Cas6 Feature: gene Location: 19552-20031 bp Feature: domain Description: CcmA Location: 19645-19969 bp Feature: domain Description: CcmA Location: 19645-19969 bp Feature: gene Location: 20068-20622 bp Feature: domain Description: CcmA Location: 20356-20608 bp Feature: domain Description: CcmA Location: 2 0356-2 0608 bp Feature: gene Location: 20694-22406 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20700-21360 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 0700-2 1360 bp Feature: domain Description: Cas1_I-II-III Location: 21441-22359 bp Feature: domain Description: Cas1_I-II-III Location: 2 1441-2 2 359 bp Feature: gene Location: 22430-23452 bp Feature: domain Description: CRISPR_Cas6 Location: 23060-23399 bp Feature: domain Description: CRISPR_Cas6 Location: 2 3060-2 3399 bp Feature: gene Location: 23962-24147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), RVT-CRISPR, Cas1_I-II-III (cl00656), CRISPR_Cas6 (pfam10040)

Seq: QEUJ01000019.1 Candidatus Brocadia sp. isolate AMX1 J3_scaffold_464, whole genome shotgun sequence (53744 bp)
Overview 1 RT 1: 2442-4886 bp Neighborhood of RT #1 [2442, 4903] arc_metj RVT-GII GIIM PemK_toxin Feature: gene Location: 2442-2717 bp Feature: domain Description: arc_metj Location: 2472-2589 bp Feature: domain Description: arc_metj Location: 2472-2589 bp Feature: gene Location: 2762-3049 bp Feature: gene Location: 3269-3886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3284-3509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 284-3 509 bp Feature: domain Description: GIIM Note: maturase Location: 3581-3800 bp Feature: domain Description: GIIM Note: maturase Location: 3 581-3 800 bp Feature: gene Location: 4140-4286 bp Feature: gene Location: 4658-4903 bp Feature: domain Description: PemK_toxin Location: 4697-4886 bp Feature: domain Description: PemK_toxin Location: 4697-4886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT arc_metj (LOAD_arc_metj), RVT-GII, GIIM (pfam08388), PemK_toxin (pfam02452)