myRT

myRT report for GCA_003577475.1_ASM357747v1

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Seq: QPEP01000010.1 Oceanospirillales bacterium WDS2A16A WDS2A16A_scaffold10, whole genome shotgun sequence (184113 bp)
Overview 1 RT 1: 3-5382 bp Neighborhood of RT #1 [3, 5399] RVT-GII GIIM CsiV PRK10689 Feature: gene Location: 3-1193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90-71 1 bp Feature: domain Description: GIIM Note: maturase Location: 753-981 bp Feature: domain Description: GIIM Note: maturase Location: 753-981 bp Feature: gene Location: 1213-1950 bp Feature: domain Description: CsiV Location: 1225-1924 bp Feature: domain Description: CsiV Location: 1 225-1 924 bp Feature: gene Location: 1947-5399 bp Feature: domain Description: PRK10689 Location: 1962-5382 bp Feature: domain Description: PRK1 0689 Location: 1 962-5382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CsiV (pfam10972), PRK10689 (transcription-repair coupling factor; Provisional)

Seq: QPEP01000017.1 Oceanospirillales bacterium WDS2A16A WDS2A16A_scaffold17, whole genome shotgun sequence (98548 bp)
Overview 1 RT 1: 58710-64157 bp Neighborhood of RT #1 [58710, 64162] TnpB_IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C GMP_PMI Feature: gene Location: 58710-59012 bp Feature: domain Description: TnpB_IS66 Location: 58713-58971 bp Feature: domain Description: TnpB_IS66 Location: 58713-58971 bp Feature: gene Location: 59039-60481 bp Feature: domain Description: DDE_Tnp_IS66 Location: 59606-60443 bp Feature: domain Description: DDE_Tnp_IS66 Location: 59606-60443 bp Feature: gene Location: 60941-62176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61142-61799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61142 -61799 bp Feature: domain Description: GIIM Note: maturase Location: 61877-62090 bp Feature: domain Description: GIIM Note: maturase Location: 61877-62 090 bp Feature: gene Location: 62286-62465 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 62304-62412 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 62 304-62 412 bp Feature: gene Location: 62729-64162 bp Feature: domain Description: GMP_PMI Location: 62732-64157 bp Feature: domain Description: GMP_PMI Location: 62 732 -64157 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), DDE_Tnp_IS66 (pfam03050), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), GMP_PMI (TIGR01479)

Seq: QPEP01000033.1 Oceanospirillales bacterium WDS2A16A WDS2A16A_scaffold33, whole genome shotgun sequence (616 bp)
Overview 1 RT 1: 3-588 bp Neighborhood of RT #1 [3, 614] RVT-GII GIIM Feature: gene Location: 3-614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-3 18 bp Feature: domain Description: GIIM Note: maturase Location: 360-588 bp Feature: domain Description: GIIM Note: maturase Location: 3 60-588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QPEP01000005.1 Oceanospirillales bacterium WDS2A16A WDS2A16A_scaffold5, whole genome shotgun sequence (255077 bp)
Overview 1 RT 1: 40919-50791 bp Neighborhood of RT #1 [40919, 50919] COG0610 RVT-UG1 nitrilase_Rim1_like MhpC Feature: gene Location: 40919-41269 bp Feature: gene Location: 41333-44581 bp Feature: domain Description: COG0610 Location: 41354-44141 bp Feature: domain Description: COG0610 Location: 4 1354 -4 4 14 1 bp Feature: gene Location: 44625-48338 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 45246-45750 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 4 524 6-4 5750 bp Feature: domain Description: nitrilase_Rim1_like Location: 47733-48042 bp Feature: domain Description: nitrilase_Rim1_like Location: 4 7733-4 804 2 bp Feature: gene Location: 48382-49431 bp Feature: gene Location: 50026-50919 bp Feature: domain Description: MhpC Location: 50149-50791 bp Feature: domain Description: MhpC Location: 5014 9-50791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG1, nitrilase_Rim1_like (cd07574), MhpC (COG0596)