myRT

myRT report for GCA_003577555.1_ASM357755v1

Download annotations/find similar RTs

Seq: PKCA01000097.1 Escherichia coli strain APC43A NODE_43_length_29637_cov_177.027_ID_85, whole genome shotgun sequence (29637 bp)
Overview 1 RT 1: 281-3334 bp Neighborhood of RT #1 [281, 3334] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 281-703 bp Feature: domain Description: DUF1380 Location: 284-581 bp Feature: domain Description: DUF1 380 Location: 284-581 bp Feature: gene Location: 700-891 bp Feature: gene Location: 1205-2872 bp Feature: RT Description: RVT_N Location: 1253-1490 bp Feature: RT Description: RVT_N Location: 1 253-1 490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1541-2183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 541 -21 83 bp Feature: domain Description: GIIM Note: maturase Location: 2234-2468 bp Feature: domain Description: GIIM Note: maturase Location: 2234-2468 bp Feature: domain Description: HNHc Note: nucleases Location: 2678-2837 bp Feature: domain Description: HNHc Note: nucleases Location: 2678-2837 bp Feature: gene Location: 2888-3025 bp Feature: gene Location: 3152-3334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: PKCA01000161.1 Escherichia coli strain APC43A NODE_8_length_183717_cov_113.911_ID_15, whole genome shotgun sequence (183717 bp)
Overview 1 RT 1: 131608-134918 bp Neighborhood of RT #1 [131608, 134923] pyrE RVT-Retrons slmA coaBC_dfp dut Feature: gene Location: 131608-132264 bp Feature: domain Description: pyrE Location: 131626-132259 bp Feature: domain Description: pyrE Location: 13162 6-132 2 59 bp Feature: gene Location: 132562-132876 bp Feature: gene Location: 132969-133520 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132972-133245 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 132 972 -1332 45 bp Feature: gene Location: 133566-133991 bp Feature: domain Description: slmA Location: 133569-133977 bp Feature: domain Description: slmA Location: 133569-133977 bp Feature: gene Location: 134366-134923 bp Feature: domain Description: coaBC_dfp Location: 134372-134558 bp Feature: domain Description: coaBC_dfp Location: 134372 -134558 bp Feature: domain Description: dut Location: 134573-134918 bp Feature: domain Description: dut Location: 134573-134918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), coaBC_dfp (TIGR00521), dut (TIGR00576)