myRT

myRT report for GCA_003603235.1_ASM360323v1

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Seq: QTMP01000009.1 (248587 bp)
Overview 1 RT 1: 135596-139193 bp Neighborhood of RT #1 [135596, 139193] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 135596-135967 bp Feature: domain Description: COG2865 Location: 135680-135944 bp Feature: domain Description: COG2865 Location: 1 35680-1 35944 bp Feature: gene Location: 136268-136486 bp Feature: gene Location: 136605-138266 bp Feature: domain Description: RVT_N Location: 136659-136902 bp Feature: domain Description: RVT_N Location: 1 36659-1 36902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136947-137595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36947-1 37595 bp Feature: domain Description: GIIM Note: maturase Location: 137646-137880 bp Feature: domain Description: GIIM Note: maturase Location: 1 37646-1 37880 bp Feature: gene Location: 138592-138897 bp Feature: gene Location: 138999-139193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTMP01000001.1 (729280 bp)
Overview 1 RT 1: 608273-617485 bp Neighborhood of RT #1 [608273, 617496] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 608273-609013 bp Feature: gene Location: 609159-609461 bp Feature: domain Description: DUF4134 Location: 609189-609456 bp Feature: domain Description: DUF4134 Location: 609189-609456 bp Feature: gene Location: 610096-611913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610360-611182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 610360-611182 bp Feature: domain Description: Intron_maturas2 Location: 611257-611584 bp Feature: domain Description: Intron_maturas2 Location: 6112 57-611584 bp Feature: domain Description: HNHc Note: nucleases Location: 611737-611887 bp Feature: domain Description: HNHc Note: nucleases Location: 611737-611887 bp Feature: gene Location: 611823-612296 bp Feature: domain Description: DUF4133 Location: 612027-612255 bp Feature: domain Description: DUF4133 Location: 612 02 7-612 2 55 bp Feature: gene Location: 612293-613231 bp Feature: domain Description: Bac_Flav_CT_G Location: 612296-613217 bp Feature: domain Description: Bac_Flav_CT_G Location: 612 2 96-6132 17 bp Feature: gene Location: 613410-613559 bp Feature: gene Location: 613767-615476 bp Feature: domain Description: RVT_N Location: 613869-614112 bp Feature: domain Description: RVT_N Location: 613869-614112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614157-614805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614157-614805 bp Feature: domain Description: GIIM Note: maturase Location: 614859-615090 bp Feature: domain Description: GIIM Note: maturase Location: 614859-615090 bp Feature: gene Location: 615473-617167 bp Feature: domain Description: Bac_Flav_CT_G Location: 615593-617159 bp Feature: domain Description: Bac_Flav_CT_G Location: 615593-617159 bp Feature: gene Location: 617182-617496 bp Feature: domain Description: DUF3876 Location: 617236-617485 bp Feature: domain Description: DUF3876 Location: 6172 36-617485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QTMP01000003.1 (337575 bp)
Overview 1 RT 1: 309704-317061 bp Neighborhood of RT #1 [309704, 317105] HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG24 dnaG Feature: gene Location: 309704-309982 bp Feature: domain Description: HTH_17 Location: 309824-309971 bp Feature: domain Description: HTH_17 Location: 3 09824-3 09971 bp Feature: gene Location: 310243-311448 bp Feature: domain Description: Arm-DNA-bind_5 Location: 310276-310492 bp Feature: domain Description: Arm-DNA-bind_5 Location: 3 10276-3 10492 bp Feature: domain Description: Phage_int_SAM_5 Location: 310630-310858 bp Feature: domain Description: Phage_int_SAM_5 Location: 3 1063 0-3 10858 bp Feature: domain Description: INTN1_C_like Location: 310930-311434 bp Feature: domain Description: INTN1_C_like Location: 3 1093 0-3 1143 4 bp Feature: gene Location: 311885-315322 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 312395-312860 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 3 123 95-3 12860 bp Feature: gene Location: 315324-316064 bp Feature: gene Location: 316071-317105 bp Feature: domain Description: dnaG Location: 316158-317061 bp Feature: domain Description: dnaG Location: 3 16158-3 17061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG24, dnaG (TIGR01391)

Seq: QTMP01000047.1 (2521 bp)
Overview 1 RT 1: 578-2519 bp Neighborhood of RT #1 [578, 2519] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 578-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 2-1664 bp Feature: domain Description: Intron_maturas2 Location: 1760-2099 bp Feature: domain Description: Intron_maturas2 Location: 1760-2099 bp Feature: domain Description: HNHc Note: nucleases Location: 2207-2360 bp Feature: domain Description: HNHc Note: nucleases Location: 2207-2360 bp Feature: gene Location: 2373-2519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)