myRT

myRT report for GCA_003603275.1_ASM360327v1

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Seq: QTMS01000087.1 (2486 bp)
Overview 1 RT 1: 115-2356 bp Neighborhood of RT #1 [115, 2356] RVT-GII Intron_maturas2 Feature: gene Location: 115-1923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1 201 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: domain Description: Intron_maturas2 Location: 1 270-1 579 bp Feature: gene Location: 1925-2107 bp Feature: gene Location: 2213-2356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QTMS01000021.1 (72485 bp)
Overview 1 RT 1: 51881-56813 bp Neighborhood of RT #1 [51881, 57076] YWFCY RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 51881-52804 bp Feature: domain Description: YWFCY Location: 51887-52064 bp Feature: domain Description: YWFCY Location: 51887-52 064 bp Feature: gene Location: 53142-53276 bp Feature: gene Location: 53442-55094 bp Feature: domain Description: RVT_N Location: 53496-53739 bp Feature: domain Description: RVT_N Location: 53496-53739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53784-54432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53784-54432 bp Feature: domain Description: GIIM Note: maturase Location: 54486-54717 bp Feature: domain Description: GIIM Note: maturase Location: 54486-54717 bp Feature: gene Location: 55099-56325 bp Feature: domain Description: TraG-D_C Location: 55681-56014 bp Feature: domain Description: TraG-D_C Location: 55681-56014 bp Feature: gene Location: 56543-57076 bp Feature: domain Description: DUF4326 Location: 56558-56813 bp Feature: domain Description: DUF432 6 Location: 56558-56813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: QTMS01000023.1 (69184 bp)
Overview 1 RT 1: 25515-28723 bp Neighborhood of RT #1 [25515, 28723] RVT-UG27 Feature: gene Location: 25515-25793 bp Feature: gene Location: 25823-26089 bp Feature: gene Location: 26139-27401 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 26331-26967 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 263 3 1-26967 bp Feature: gene Location: 27394-28062 bp Feature: gene Location: 28076-28723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QTMS01000047.1 (21776 bp)
Overview 1 RT 1: 10678-14797 bp Neighborhood of RT #1 [10678, 14802] Bac_Flav_CT_N Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 10678-11175 bp Feature: domain Description: Bac_Flav_CT_N Location: 10681-10756 bp Feature: domain Description: Bac_Flav_CT_N Location: 10681-10756 bp Feature: domain Description: Bac_Flav_CT_N Location: 10891-11155 bp Feature: domain Description: Bac_Flav_CT_N Location: 10891-11155 bp Feature: gene Location: 11346-11681 bp Feature: gene Location: 11716-13527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11980-12802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11980-12802 bp Feature: domain Description: Intron_maturas2 Location: 12871-13180 bp Feature: domain Description: Intron_maturas2 Location: 12871-13180 bp Feature: gene Location: 13517-14224 bp Feature: domain Description: Bac_Flav_CT_N Location: 13643-14204 bp Feature: domain Description: Bac_Flav_CT_N Location: 1364 3-14 204 bp Feature: gene Location: 14227-14802 bp Feature: domain Description: TraO Location: 14302-14797 bp Feature: domain Description: TraO Location: 14 302-14 797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)

Seq: QTMS01000050.1 (20488 bp)
Overview 1 RT 1: 3-2553 bp Neighborhood of RT #1 [3, 2553] RVT-DGRs Feature: gene Location: 3-245 bp Feature: gene Location: 342-1643 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 555-1152 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5 5 5 -115 2 bp Feature: gene Location: 1676-2125 bp Feature: gene Location: 2311-2553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTMS01000001.1 (507148 bp)
Overview 1 RT 1: 26018-30084 bp 2 RT 2: 36355-42307 bp Neighborhood of RT #1 [26018, 30084] TraG-D_C RVT_N RVT-GII GIIM Neighborhood of RT #2 [36355, 42307] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 26018-26554 bp Feature: gene Location: 26726-27961 bp Feature: domain Description: TraG-D_C Location: 27308-27641 bp Feature: domain Description: TraG-D_C Location: 27308-276 41 bp Feature: gene Location: 27966-29618 bp Feature: domain Description: RVT_N Location: 28020-28263 bp Feature: domain Description: RVT_N Location: 28020-2826 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28308-28956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28308-28956 bp Feature: domain Description: GIIM Note: maturase Location: 29010-29241 bp Feature: domain Description: GIIM Note: maturase Location: 29010-29241 bp Feature: gene Location: 29700-29873 bp Feature: gene Location: 29935-30084 bp Feature: gene Location: 36355-36678 bp Feature: domain Description: DUF4133 Location: 36370-36640 bp Feature: domain Description: DUF4133 Location: 36 370-36 6 40 bp Feature: gene Location: 36675-38771 bp Feature: domain Description: Bac_Flav_CT_G Location: 36678-38757 bp Feature: domain Description: Bac_Flav_CT_G Location: 36 6 78-38757 bp Feature: gene Location: 39319-41133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39583-40405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39583-40405 bp Feature: domain Description: Intron_maturas2 Location: 40480-40798 bp Feature: domain Description: Intron_maturas2 Location: 40480-40798 bp Feature: domain Description: HNHc Note: nucleases Location: 40954-41104 bp Feature: domain Description: HNHc Note: nucleases Location: 40954-41104 bp Feature: gene Location: 41211-41687 bp Feature: domain Description: Bac_Flav_CT_G Location: 41238-41652 bp Feature: domain Description: Bac_Flav_CT_G Location: 41238-416 52 bp Feature: gene Location: 41693-42307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTMS01000066.1 (8402 bp)
Overview 1 RT 1: 1-8016 bp Neighborhood of RT #1 [1, 8399] TetM_like RVT_N RVT-GII YkfC COG4646 Feature: gene Location: 1-756 bp Feature: domain Description: TetM_like Location: 64-757 bp Feature: domain Description: TetM_like Location: 64-7 57 bp Feature: gene Location: 1368-2681 bp Feature: gene Location: 2635-4371 bp Feature: domain Description: RVT_N Location: 2758-3001 bp Feature: domain Description: RVT_N Location: 27 58-3001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3046-3694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3046-3694 bp Feature: domain Description: YkfC Location: 3904-3994 bp Feature: domain Description: YkfC Location: 3904-3994 bp Feature: gene Location: 4977-8399 bp Feature: domain Description: COG4646 Location: 5946-8016 bp Feature: domain Description: COG4646 Location: 5946-8016 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetM_like (cd04168), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QTMS01000002.1 (447509 bp)
Overview 1 RT 1: 214395-223857 bp Neighborhood of RT #1 [214395, 223857] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 214395-221132 bp Feature: domain Description: Laminin_G_3 Location: 215856-215934 bp Feature: domain Description: Laminin_G_3 Location: 2158 56-215934 bp Feature: domain Description: Laminin_G_3 Location: 216585-217011 bp Feature: domain Description: Laminin_G_3 Location: 21658 5-217011 bp Feature: gene Location: 221377-221532 bp Feature: gene Location: 221649-222953 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 221862-222456 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2218 62-222456 bp Feature: gene Location: 222950-223435 bp Feature: gene Location: 223615-223857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs