myRT

myRT report for GCA_003603315.1_ASM360331v1

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Seq: QTMO01000002.1 (447509 bp)
Overview 1 RT 1: 214395-223857 bp Neighborhood of RT #1 [214395, 223857] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 214395-221132 bp Feature: domain Description: Laminin_G_3 Location: 215856-215934 bp Feature: domain Description: Laminin_G_3 Location: 21 5856-21 5934 bp Feature: domain Description: Laminin_G_3 Location: 216585-217011 bp Feature: domain Description: Laminin_G_3 Location: 21 6585-21 701 1 bp Feature: gene Location: 221377-221532 bp Feature: gene Location: 221649-222953 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 221862-222456 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 221 862-222456 bp Feature: gene Location: 222950-223435 bp Feature: gene Location: 223615-223857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: QTMO01000068.1 (7388 bp)
Overview 1 RT 1: 3-7002 bp Neighborhood of RT #1 [3, 7385] RVT_N RVT-GII YkfC COG4646 Feature: gene Location: 3-149 bp Feature: gene Location: 354-1667 bp Feature: gene Location: 1621-3357 bp Feature: domain Description: RVT_N Location: 1744-1987 bp Feature: domain Description: RVT_N Location: 1744-1987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2032-2680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 032 -2 680 bp Feature: domain Description: YkfC Location: 2890-2980 bp Feature: domain Description: YkfC Location: 2 890-2 980 bp Feature: gene Location: 3963-7385 bp Feature: domain Description: COG4646 Location: 4932-7002 bp Feature: domain Description: COG4646 Location: 4932 -7002 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: QTMO01000038.1 (35466 bp)
Overview 1 RT 1: 24368-28487 bp Neighborhood of RT #1 [24368, 28492] Bac_Flav_CT_N Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 24368-24865 bp Feature: domain Description: Bac_Flav_CT_N Location: 24371-24446 bp Feature: domain Description: Bac_Flav_CT_N Location: 243 71-24446 bp Feature: domain Description: Bac_Flav_CT_N Location: 24581-24845 bp Feature: domain Description: Bac_Flav_CT_N Location: 24581-24845 bp Feature: gene Location: 25036-25371 bp Feature: gene Location: 25406-27217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25670-26492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25670-26492 bp Feature: domain Description: Intron_maturas2 Location: 26561-26870 bp Feature: domain Description: Intron_maturas2 Location: 26561-26870 bp Feature: gene Location: 27207-27914 bp Feature: domain Description: Bac_Flav_CT_N Location: 27333-27894 bp Feature: domain Description: Bac_Flav_CT_N Location: 273 3 3 -27894 bp Feature: gene Location: 27917-28492 bp Feature: domain Description: TraO Location: 27992-28487 bp Feature: domain Description: TraO Location: 27992-28487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_N (TIGR03780), RVT-GII, Intron_maturas2 (pfam01348), TraO (pfam10626)

Seq: QTMO01000022.1 (69184 bp)
Overview 1 RT 1: 25515-28723 bp Neighborhood of RT #1 [25515, 28723] RVT-UG27 Feature: gene Location: 25515-25793 bp Feature: gene Location: 25823-26089 bp Feature: gene Location: 26139-27401 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 26331-26967 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 26331-26967 bp Feature: gene Location: 27394-28062 bp Feature: gene Location: 28076-28723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG27

Seq: QTMO01000050.1 (20493 bp)
Overview 1 RT 1: 17936-20492 bp Neighborhood of RT #1 [17936, 20492] RVT-DGRs Feature: gene Location: 17936-18178 bp Feature: gene Location: 18364-18813 bp Feature: gene Location: 18846-20147 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 19059-19656 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1905 9-1965 6 bp Feature: gene Location: 20244-20492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTMO01000001.1 (507311 bp)
Overview 1 RT 1: 26018-30084 bp 2 RT 2: 36355-42307 bp Neighborhood of RT #1 [26018, 30084] TraG-D_C RVT_N RVT-GII GIIM Neighborhood of RT #2 [36355, 42307] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 26018-26554 bp Feature: gene Location: 26726-27961 bp Feature: domain Description: TraG-D_C Location: 27308-27641 bp Feature: domain Description: TraG-D_C Location: 27308-276 41 bp Feature: gene Location: 27966-29618 bp Feature: domain Description: RVT_N Location: 28020-28263 bp Feature: domain Description: RVT_N Location: 28020-2826 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28308-28956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28308-28956 bp Feature: domain Description: GIIM Note: maturase Location: 29010-29241 bp Feature: domain Description: GIIM Note: maturase Location: 29010-29241 bp Feature: gene Location: 29700-29873 bp Feature: gene Location: 29935-30084 bp Feature: gene Location: 36355-36678 bp Feature: domain Description: DUF4133 Location: 36370-36640 bp Feature: domain Description: DUF4133 Location: 36 370-36 6 40 bp Feature: gene Location: 36675-38771 bp Feature: domain Description: Bac_Flav_CT_G Location: 36678-38757 bp Feature: domain Description: Bac_Flav_CT_G Location: 36 6 78-38757 bp Feature: gene Location: 39319-41133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39583-40405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39583-40405 bp Feature: domain Description: Intron_maturas2 Location: 40480-40798 bp Feature: domain Description: Intron_maturas2 Location: 40480-40798 bp Feature: domain Description: HNHc Note: nucleases Location: 40954-41104 bp Feature: domain Description: HNHc Note: nucleases Location: 40954-41104 bp Feature: gene Location: 41211-41687 bp Feature: domain Description: Bac_Flav_CT_G Location: 41238-41652 bp Feature: domain Description: Bac_Flav_CT_G Location: 41238-416 52 bp Feature: gene Location: 41693-42307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTMO01000020.1 (78309 bp)
Overview 1 RT 1: 51881-56813 bp Neighborhood of RT #1 [51881, 57076] YWFCY RVT_N RVT-GII GIIM TraG-D_C DUF4326 Feature: gene Location: 51881-52804 bp Feature: domain Description: YWFCY Location: 51887-52064 bp Feature: domain Description: YWFCY Location: 51887 -52064 bp Feature: gene Location: 53142-53276 bp Feature: gene Location: 53442-55094 bp Feature: domain Description: RVT_N Location: 53496-53739 bp Feature: domain Description: RVT_N Location: 53496-537 39 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53784-54432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537 84-54432 bp Feature: domain Description: GIIM Note: maturase Location: 54486-54717 bp Feature: domain Description: GIIM Note: maturase Location: 54486-547 17 bp Feature: gene Location: 55099-56325 bp Feature: domain Description: TraG-D_C Location: 55681-56014 bp Feature: domain Description: TraG-D_C Location: 55681-56014 bp Feature: gene Location: 56543-57076 bp Feature: domain Description: DUF4326 Location: 56558-56813 bp Feature: domain Description: DUF4326 Location: 56558-56813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), DUF4326 (pfam14216)

Seq: QTMO01000082.1 (3408 bp)
Overview 1 RT 1: 49-3278 bp Neighborhood of RT #1 [49, 3278] Toprim_2 RVT-GII Intron_maturas2 Feature: gene Location: 49-1083 bp Feature: domain Description: Toprim_2 Location: 706-994 bp Feature: domain Description: Toprim_2 Location: 706-994 bp Feature: gene Location: 540-788 bp Feature: gene Location: 1037-2845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301-2123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1301-2123 bp Feature: domain Description: Intron_maturas2 Location: 2192-2501 bp Feature: domain Description: Intron_maturas2 Location: 2192-2501 bp Feature: gene Location: 3135-3278 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toprim_2 (pfam13155), RVT-GII, Intron_maturas2 (pfam01348)