myRT

myRT report for GCA_003603455.1_ASM360345v1

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Seq: QTNF01000032.1 (74261 bp)
Overview 1 RT 1: 28528-39913 bp Neighborhood of RT #1 [28528, 39913] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 CotH LRR_AMN1 Feature: gene Location: 28528-29673 bp Feature: domain Description: Arm-DNA-bind_5 Location: 28552-28798 bp Feature: domain Description: Arm-DNA-bind_5 Location: 28552-28798 bp Feature: domain Description: Phage_int_SAM_5 Location: 28837-29122 bp Feature: domain Description: Phage_int_SAM_5 Location: 28837-291 22 bp Feature: domain Description: INTN1_C_like Location: 29161-29635 bp Feature: domain Description: INTN1 _C_like Location: 291 61 -29635 bp Feature: gene Location: 29724-30218 bp Feature: gene Location: 30220-31575 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30496-31087 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30496-31 087 bp Feature: gene Location: 31949-38737 bp Feature: domain Description: Laminin_G_3 Location: 34385-34766 bp Feature: domain Description: Laminin_G_3 Location: 34385-34766 bp Feature: domain Description: CotH Location: 35030-36074 bp Feature: domain Description: CotH Location: 35030-36074 bp Feature: domain Description: LRR_AMN1 Location: 36491-36962 bp Feature: domain Description: LRR_AMN1 Location: 36491 -36962 bp Feature: gene Location: 38747-39913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), CotH (pfam08757), LRR_AMN1 (sd00034)

Seq: QTNF01000012.1 (153240 bp)
Overview 1 RT 1: 80917-84296 bp Neighborhood of RT #1 [80917, 84296] RVT-DGRs Feature: gene Location: 80917-81501 bp Feature: gene Location: 81449-81679 bp Feature: gene Location: 81645-82460 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 81978-82302 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 81978-82 302 bp Feature: gene Location: 82744-82947 bp Feature: gene Location: 82977-84296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTNF01000011.1 (153864 bp)
Overview 1 RT 1: 83010-95411 bp Neighborhood of RT #1 [83010, 95536] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 83010-84809 bp Feature: domain Description: rpsA Location: 83079-84690 bp Feature: domain Description: rpsA Location: 83 079-84690 bp Feature: gene Location: 84906-90947 bp Feature: domain Description: DUF4011 Location: 86136-86649 bp Feature: domain Description: DUF4011 Location: 8613 6-86649 bp Feature: domain Description: DEXXQc_SF1 Location: 86988-87543 bp Feature: domain Description: DEXXQc_SF1 Location: 86988-87543 bp Feature: domain Description: DEXXQc_SF1 Location: 88698-89175 bp Feature: domain Description: DEXXQc_SF1 Location: 88698-89175 bp Feature: domain Description: KOG1803 Location: 89310-89688 bp Feature: domain Description: KOG1803 Location: 893 10-89688 bp Feature: domain Description: MTES_1575 Location: 89847-90132 bp Feature: domain Description: MTES_1575 Location: 89847-9013 2 bp Feature: domain Description: DUF3320 Location: 90462-90597 bp Feature: domain Description: DUF3 3 20 Location: 90462-90597 bp Feature: gene Location: 90998-92128 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91319-91862 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 913 19-91862 bp Feature: gene Location: 92336-94525 bp Feature: gene Location: 94712-95536 bp Feature: domain Description: PDDEXK_2 Location: 94733-95411 bp Feature: domain Description: PDDEXK_2 Location: 9473 3 -95411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: QTNF01000023.1 (94263 bp)
Overview 1 RT 1: 16372-22630 bp Neighborhood of RT #1 [16372, 22630] OMP_b-brl_2 DUF5018 PCMD RVT-GII GIIM PRK14031 Feature: gene Location: 16372-17157 bp Feature: domain Description: OMP_b-brl_2 Location: 16438-17086 bp Feature: domain Description: OMP_b-brl_2 Location: 164 38-17086 bp Feature: gene Location: 17175-18314 bp Feature: domain Description: DUF5018 Location: 17364-17565 bp Feature: domain Description: DUF5018 Location: 17364 -17565 bp Feature: domain Description: PCMD Location: 17568-18303 bp Feature: domain Description: PCMD Location: 17568-18303 bp Feature: gene Location: 19273-20679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19615-20233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19615-20233 bp Feature: domain Description: GIIM Note: maturase Location: 20290-20512 bp Feature: domain Description: GIIM Note: maturase Location: 20290-20512 bp Feature: gene Location: 21092-22426 bp Feature: domain Description: PRK14031 Location: 21095-22424 bp Feature: domain Description: PRK14 031 Location: 21095-224 24 bp Feature: gene Location: 22499-22630 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_b-brl_2 (pfam13568), DUF5018 (pfam16410), PCMD (pfam13201), RVT-GII, GIIM (pfam08388), PRK14031 (NADP-specific glutamate dehydrogenase)

Seq: QTNF01000017.1 (122920 bp)
Overview 1 RT 1: 44038-54257 bp 2 RT 2: 95274-99955 bp Neighborhood of RT #1 [44038, 54268] DUF1566 RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [95274, 99955] RVT-UG27 Feature: gene Location: 44038-45867 bp Feature: gene Location: 45930-46283 bp Feature: gene Location: 46274-47695 bp Feature: domain Description: DUF1566 Location: 46346-46490 bp Feature: domain Description: DUF15 66 Location: 46346-46490 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46679-47420 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46679-47420 bp Feature: gene Location: 47708-48109 bp Feature: domain Description: Avd_like Location: 47747-48086 bp Feature: domain Description: Avd_like Location: 47747-48086 bp Feature: gene Location: 48239-54268 bp Feature: domain Description: DUF1566 Location: 53954-54257 bp Feature: domain Description: DUF15 66 Location: 5 395 4-5 425 7 bp Feature: gene Location: 95274-95876 bp Feature: gene Location: 95959-96189 bp Feature: gene Location: 96186-97454 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 96375-97011 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 96375 -97011 bp Feature: gene Location: 98473-98931 bp Feature: gene Location: 98966-99955 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376), RVT-UG27

Seq: QTNF01000080.1 (2417 bp)
Overview 1 RT 1: 122-2241 bp Neighborhood of RT #1 [122, 2241] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176 -419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46 4-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 116 6 -1397 bp Feature: gene Location: 1940-2074 bp Feature: gene Location: 2092-2241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTNF01000003.1 (296869 bp)
Overview 1 RT 1: 195200-197409 bp 2 RT 2: 230712-235421 bp Neighborhood of RT #1 [195200, 197666] RVT-GII HTH_28 HTH_23 COG4584 Neighborhood of RT #2 [230712, 235435] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G Feature: gene Location: 195200-195562 bp Feature: gene Location: 195566-195775 bp Feature: gene Location: 195805-196002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195808-196000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 195808-196000 bp Feature: gene Location: 196123-196398 bp Feature: domain Description: HTH_28 Location: 196147-196294 bp Feature: domain Description: HTH_28 Location: 196147 -196294 bp Feature: gene Location: 196560-197666 bp Feature: domain Description: HTH_23 Location: 196584-196707 bp Feature: domain Description: HTH_23 Location: 196584-1967 07 bp Feature: domain Description: COG4584 Location: 196821-197409 bp Feature: domain Description: COG4584 Location: 196821-197 409 bp Feature: gene Location: 230712-232541 bp Feature: domain Description: Bac_Flav_CT_G Location: 230715-232527 bp Feature: domain Description: Bac_Flav_CT_G Location: 2307 15-232527 bp Feature: gene Location: 232569-232742 bp Feature: gene Location: 233067-234899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233352-234174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 233352-23417 4 bp Feature: domain Description: Intron_maturas2 Location: 234249-234555 bp Feature: domain Description: Intron_maturas2 Location: 234249-234555 bp Feature: domain Description: HNHc Note: nucleases Location: 234705-234870 bp Feature: domain Description: HNHc Note: nucleases Location: 2347 05-23487 0 bp Feature: gene Location: 234977-235255 bp Feature: domain Description: Bac_Flav_CT_G Location: 234995-235253 bp Feature: domain Description: Bac_Flav_CT_G Location: 234995-235253 bp Feature: gene Location: 235262-235435 bp Feature: domain Description: Bac_Flav_CT_G Location: 235265-235421 bp Feature: domain Description: Bac_Flav_CT_G Location: 235265-235421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_28 (pfam13518), HTH_23 (pfam13384), COG4584 (Transposase ), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTNF01000031.1 (75661 bp)
Overview 1 RT 1: 61763-66280 bp Neighborhood of RT #1 [61763, 66318] HU-HIG PHA00447 RVT-GII GIIM GT4_PimA-like GT4_CapM-like Feature: gene Location: 61763-62251 bp Feature: domain Description: HU-HIG Location: 61769-62090 bp Feature: domain Description: HU-HIG Location: 61769-62090 bp Feature: gene Location: 62537-62950 bp Feature: domain Description: PHA00447 Location: 62549-62930 bp Feature: domain Description: PHA00447 Location: 62549-62930 bp Feature: gene Location: 63045-64457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63381-63996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6338 1-63996 bp Feature: domain Description: GIIM Note: maturase Location: 64050-64263 bp Feature: domain Description: GIIM Note: maturase Location: 64050-64263 bp Feature: gene Location: 65222-65779 bp Feature: domain Description: GT4_PimA-like Location: 65231-65765 bp Feature: domain Description: GT4_PimA-like Location: 65231-65765 bp Feature: gene Location: 65776-66318 bp Feature: domain Description: GT4_CapM-like Location: 65782-66280 bp Feature: domain Description: GT4_CapM-like Location: 6578 2-6628 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HU-HIG (pfam18291), PHA00447 (lysozyme), RVT-GII, GIIM (pfam08388), GT4_PimA-like (cd03801), GT4_CapM-like (cd03808)