myRT

myRT report for GCA_003603585.1_ASM360358v1

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Seq: QTNJ01000067.1 (2521 bp)
Overview 1 RT 1: 578-2519 bp Neighborhood of RT #1 [578, 2519] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 578-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1 664 bp Feature: domain Description: Intron_maturas2 Location: 1760-2099 bp Feature: domain Description: Intron_maturas2 Location: 1 760-2099 bp Feature: domain Description: HNHc Note: nucleases Location: 2207-2360 bp Feature: domain Description: HNHc Note: nucleases Location: 2207-2360 bp Feature: gene Location: 2373-2519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTNJ01000009.1 (224901 bp)
Overview 1 RT 1: 197036-204393 bp Neighborhood of RT #1 [197036, 204437] HTH_17 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-UG24 dnaG Feature: gene Location: 197036-197437 bp Feature: domain Description: HTH_17 Location: 197279-197426 bp Feature: domain Description: HTH_17 Location: 1972 79-19742 6 bp Feature: gene Location: 197575-198780 bp Feature: domain Description: Arm-DNA-bind_5 Location: 197608-197824 bp Feature: domain Description: Arm-DNA-bind_5 Location: 197608-19782 4 bp Feature: domain Description: Phage_int_SAM_5 Location: 197962-198190 bp Feature: domain Description: Phage_int_SAM_5 Location: 197962 -198190 bp Feature: domain Description: INTN1_C_like Location: 198262-198766 bp Feature: domain Description: INTN1_C_like Location: 1982 62 -198766 bp Feature: gene Location: 199217-202654 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 199727-200192 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 19972 7-2 00192 bp Feature: gene Location: 202656-203396 bp Feature: gene Location: 203403-204437 bp Feature: domain Description: dnaG Location: 203490-204393 bp Feature: domain Description: dnaG Location: 2 03490-2 04393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-UG24, dnaG (TIGR01391)

Seq: QTNJ01000006.1 (284147 bp)
Overview 1 RT 1: 139094-143164 bp 2 RT 2: 171162-174759 bp Neighborhood of RT #1 [139094, 143241] RVT-DGRs TipAS COG2369 LPD3 Neighborhood of RT #2 [171162, 174759] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 139094-139336 bp Feature: gene Location: 139540-140025 bp Feature: gene Location: 140022-141323 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 140235-140832 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14023 5-14083 2 bp Feature: gene Location: 141699-141932 bp Feature: gene Location: 142030-143241 bp Feature: domain Description: TipAS Location: 142054-142357 bp Feature: domain Description: TipAS Location: 142054-1423 57 bp Feature: domain Description: COG2369 Location: 142477-142663 bp Feature: domain Description: COG23 69 Location: 142477-142663 bp Feature: domain Description: LPD3 Location: 142882-143164 bp Feature: domain Description: LPD3 Location: 142882-143 164 bp Feature: gene Location: 171162-171533 bp Feature: domain Description: COG2865 Location: 171246-171510 bp Feature: domain Description: COG2865 Location: 171246-171510 bp Feature: gene Location: 171834-172052 bp Feature: gene Location: 172171-173832 bp Feature: domain Description: RVT_N Location: 172225-172468 bp Feature: domain Description: RVT_N Location: 172225-172468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172513-173161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172513 -173 161 bp Feature: domain Description: GIIM Note: maturase Location: 173212-173446 bp Feature: domain Description: GIIM Note: maturase Location: 173 212-173 446 bp Feature: gene Location: 174158-174463 bp Feature: gene Location: 174565-174759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTNJ01000045.1 (9620 bp)
Overview 1 RT 1: 234-6438 bp Neighborhood of RT #1 [234, 6438] Relaxase Relaxase YWFCY RVT_N RVT-GII GIIM TraG-D_C Feature: gene Location: 234-1481 bp Feature: domain Description: Relaxase Location: 354-834 bp Feature: domain Description: Relaxase Location: 354 -834 bp Feature: domain Description: Relaxase Location: 1041-1266 bp Feature: domain Description: Relaxase Location: 104 1-1266 bp Feature: gene Location: 1518-2441 bp Feature: domain Description: YWFCY Location: 1524-1701 bp Feature: domain Description: YWFCY Location: 1524 -1701 bp Feature: gene Location: 3077-4729 bp Feature: domain Description: RVT_N Location: 3131-3374 bp Feature: domain Description: RVT_N Location: 3131-3374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3419-4067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 19-4 067 bp Feature: domain Description: GIIM Note: maturase Location: 4121-4352 bp Feature: domain Description: GIIM Note: maturase Location: 4 121-4 352 bp Feature: gene Location: 4734-5963 bp Feature: domain Description: TraG-D_C Location: 5313-5649 bp Feature: domain Description: TraG-D_C Location: 5313-564 9 bp Feature: gene Location: 6070-6438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696)