myRT

myRT report for GCA_003603955.1_ASM360395v1

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Seq: QTLS01000039.1 (27330 bp)
Overview 1 RT 1: 23555-27188 bp Neighborhood of RT #1 [23555, 27211] COG1373 RVT-AbiP2 Hypoth_Ymh Feature: gene Location: 23555-24811 bp Feature: domain Description: COG1373 Location: 23558-24791 bp Feature: domain Description: COG1 373 Location: 23558-24791 bp Feature: gene Location: 24870-25067 bp Feature: gene Location: 25076-26392 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 25298-25754 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 25298-25754 bp Feature: gene Location: 26417-27211 bp Feature: domain Description: Hypoth_Ymh Location: 26834-27188 bp Feature: domain Description: Hypoth_Ymh Location: 26834-271 88 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-AbiP2, Hypoth_Ymh (pfam09509)

Seq: QTLS01000074.1 (2420 bp)
Overview 1 RT 1: 122-2241 bp Neighborhood of RT #1 [122, 2241] RVT_N RVT-GII GIIM Feature: gene Location: 122-1774 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: domain Description: RVT_N Location: 176-419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1112 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: domain Description: GIIM Note: maturase Location: 1166-1397 bp Feature: gene Location: 1940-2074 bp Feature: gene Location: 2092-2241 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTLS01000016.1 (110282 bp)
Overview 1 RT 1: 10712-14804 bp Neighborhood of RT #1 [10712, 14833] DUF4141 RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_J Feature: gene Location: 10712-10939 bp Feature: domain Description: DUF4141 Location: 10727-10880 bp Feature: domain Description: DUF4141 Location: 10727-10880 bp Feature: gene Location: 10979-11140 bp Feature: gene Location: 11460-13295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11754-12576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11754-12576 bp Feature: domain Description: Intron_maturas2 Location: 12735-13104 bp Feature: domain Description: Intron_maturas2 Location: 1273 5-13 104 bp Feature: domain Description: HNHc Note: nucleases Location: 13128-13269 bp Feature: domain Description: HNHc Note: nucleases Location: 13 128-13 269 bp Feature: gene Location: 13288-13824 bp Feature: gene Location: 13829-14833 bp Feature: domain Description: Bac_Flav_CT_J Location: 13835-14804 bp Feature: domain Description: Bac_Flav_CT_J Location: 13 83 5-14804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4141 (pfam13605), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Bac_Flav_CT_J (TIGR03782)

Seq: QTLS01000023.1 (75007 bp)
Overview 1 RT 1: 49-2896 bp Neighborhood of RT #1 [49, 3402] RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 49-414 bp Feature: gene Location: 414-2075 bp Feature: domain Description: RVT_N Location: 465-708 bp Feature: domain Description: RVT_N Location: 4 65-708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-1401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 753-14 01 bp Feature: domain Description: GIIM Note: maturase Location: 1452-1686 bp Feature: domain Description: GIIM Note: maturase Location: 14 52-1686 bp Feature: gene Location: 2178-2330 bp Feature: gene Location: 2710-3402 bp Feature: domain Description: YWFCY Location: 2719-2896 bp Feature: domain Description: YWFCY Location: 2719-2896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)