myRT

myRT report for GCA_003604005.1_ASM360400v1

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Seq: QTMW01000041.1 (52552 bp)
Overview 1 RT 1: 2-5169 bp Neighborhood of RT #1 [2, 5169] RVT-GII Intron_maturas2 Toprim_2 Feature: gene Location: 2-205 bp Feature: gene Location: 753-2561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1017-1839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 7-1 839 bp Feature: domain Description: Intron_maturas2 Location: 1908-2217 bp Feature: domain Description: Intron_maturas2 Location: 1 908-221 7 bp Feature: gene Location: 2533-3462 bp Feature: domain Description: Toprim_2 Location: 3085-3373 bp Feature: domain Description: Toprim_2 Location: 3085-3373 bp Feature: gene Location: 3745-5169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Toprim_2 (pfam13155)

Seq: QTMW01000057.1 (28361 bp)
Overview 1 RT 1: 203-7681 bp 2 RT 2: 22515-27981 bp Neighborhood of RT #1 [203, 7749] matK RVT-GII Intron_maturas2 COG4646 Helicase_C PRK13351 Neighborhood of RT #2 [22515, 28358] KAP_NTPase TraG-D_C RVT-GII GIIM Feature: gene Location: 203-472 bp Feature: gene Location: 578-2380 bp Feature: domain Description: matK Location: 647-734 bp Feature: domain Description: matK Location: 647-734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842 -1664 bp Feature: domain Description: Intron_maturas2 Location: 1814-2048 bp Feature: domain Description: Intron_maturas2 Location: 1814-2 048 bp Feature: gene Location: 2494-5166 bp Feature: domain Description: COG4646 Location: 2518-3655 bp Feature: domain Description: COG4646 Location: 2 518-3655 bp Feature: domain Description: Helicase_C Location: 3868-4066 bp Feature: domain Description: Helicase_C Location: 3868-4066 bp Feature: gene Location: 5824-7749 bp Feature: domain Description: PRK13351 Location: 5827-7681 bp Feature: domain Description: PRK13351 Location: 582 7-7681 bp Feature: gene Location: 22515-25769 bp Feature: domain Description: KAP_NTPase Location: 22653-23631 bp Feature: domain Description: KAP_NTPase Location: 2 2 653-2 3631 bp Feature: gene Location: 25901-27115 bp Feature: domain Description: TraG-D_C Location: 26483-26813 bp Feature: domain Description: TraG-D_C Location: 2 6483-2 6813 bp Feature: gene Location: 27120-28358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27126-27696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 712 6-2 7696 bp Feature: domain Description: GIIM Note: maturase Location: 27750-27981 bp Feature: domain Description: GIIM Note: maturase Location: 2 7750-2 7981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), PRK13351 (elongation factor G-like protein), KAP_NTPase (pfam07693), TraG-D_C (pfam12696), GIIM (pfam08388)

Seq: QTMW01000022.1 (101366 bp)
Overview 1 RT 1: 24014-28152 bp Neighborhood of RT #1 [24014, 28152] PHA00447 KOG2036 RVT-GII GIIM HU_rel Feature: gene Location: 24014-24934 bp Feature: domain Description: PHA00447 Location: 24023-24458 bp Feature: domain Description: PHA00447 Location: 24023 -24458 bp Feature: gene Location: 24965-25315 bp Feature: domain Description: KOG2036 Location: 25004-25220 bp Feature: domain Description: KOG203 6 Location: 25004-25220 bp Feature: gene Location: 25491-26897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25833-26451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2583 3 -26451 bp Feature: domain Description: GIIM Note: maturase Location: 26505-26736 bp Feature: domain Description: GIIM Note: maturase Location: 26505-2673 6 bp Feature: gene Location: 27324-27842 bp Feature: domain Description: HU_rel Location: 27372-27696 bp Feature: domain Description: HU_rel Location: 273 72-27696 bp Feature: gene Location: 27844-28152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00447 (lysozyme), KOG2036 (KOG2036, Predicted P-loop ATPase fused to an acetyltransferase ), RVT-GII, GIIM (pfam08388), HU_rel (TIGR01201)

Seq: QTMW01000094.1 (4629 bp)
Overview 1 RT 1: 195-3671 bp Neighborhood of RT #1 [195, 3676] RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Feature: gene Location: 195-530 bp Feature: gene Location: 565-2376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 829-1651 bp Feature: domain Description: Intron_maturas2 Location: 1720-2029 bp Feature: domain Description: Intron_maturas2 Location: 1720-2029 bp Feature: gene Location: 2550-3098 bp Feature: domain Description: Bac_Flav_CT_N Location: 2553-3078 bp Feature: domain Description: Bac_Flav_CT_N Location: 2553-3078 bp Feature: gene Location: 3101-3676 bp Feature: domain Description: TraO Location: 3176-3671 bp Feature: domain Description: TraO Location: 3176-3671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Bac_Flav_CT_N (TIGR03780), TraO (pfam10626)

Seq: QTMW01000065.1 (23213 bp)
Overview 1 RT 1: 1-3441 bp Neighborhood of RT #1 [1, 3441] RVT_N RVT-GII GIIM Feature: gene Location: 1-135 bp Feature: gene Location: 132-1787 bp Feature: domain Description: RVT_N Location: 189-426 bp Feature: domain Description: RVT_N Location: 189-426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 477-1125 bp Feature: domain Description: GIIM Note: maturase Location: 1182-1413 bp Feature: domain Description: GIIM Note: maturase Location: 1182-1413 bp Feature: gene Location: 2089-2382 bp Feature: gene Location: 2812-3441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTMW01000004.1 (255455 bp)
Overview 1 RT 1: 27320-28863 bp Neighborhood of RT #1 [27320, 28863] HTH_28 RVT-GII Feature: gene Location: 27320-27472 bp Feature: gene Location: 27650-27940 bp Feature: domain Description: HTH_28 Location: 27674-27818 bp Feature: domain Description: HTH_28 Location: 276 74-27818 bp Feature: gene Location: 28079-28258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28082-28256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28082-28256 bp Feature: gene Location: 28288-28497 bp Feature: gene Location: 28501-28863 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII

Seq: QTMW01000062.1 (24366 bp)
Overview 1 RT 1: 3-8170 bp Neighborhood of RT #1 [3, 8181] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 3-146 bp Feature: domain Description: DUF4134 Location: 51-141 bp Feature: domain Description: DUF4134 Location: 51-141 bp Feature: gene Location: 438-767 bp Feature: gene Location: 781-2598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045-1867 bp Feature: domain Description: Intron_maturas2 Location: 1942-2269 bp Feature: domain Description: Intron_maturas2 Location: 1942-2269 bp Feature: domain Description: HNHc Note: nucleases Location: 2422-2572 bp Feature: domain Description: HNHc Note: nucleases Location: 2422-257 2 bp Feature: gene Location: 2508-2981 bp Feature: domain Description: DUF4133 Location: 2712-2940 bp Feature: domain Description: DUF4133 Location: 27 12-2940 bp Feature: gene Location: 2978-3916 bp Feature: domain Description: Bac_Flav_CT_G Location: 2981-3902 bp Feature: domain Description: Bac_Flav_CT_G Location: 2981-3902 bp Feature: gene Location: 4095-4244 bp Feature: gene Location: 4500-6161 bp Feature: domain Description: RVT_N Location: 4554-4797 bp Feature: domain Description: RVT_N Location: 4554-47 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4842-5490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4842-5490 bp Feature: domain Description: GIIM Note: maturase Location: 5544-5775 bp Feature: domain Description: GIIM Note: maturase Location: 5544-57 7 5 bp Feature: gene Location: 6158-7852 bp Feature: domain Description: Bac_Flav_CT_G Location: 6278-7844 bp Feature: domain Description: Bac_Flav_CT_G Location: 627 8-7 844 bp Feature: gene Location: 7867-8181 bp Feature: domain Description: DUF3876 Location: 7921-8170 bp Feature: domain Description: DUF387 6 Location: 7 921-817 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QTMW01000109.1 (2497 bp)
Overview 1 RT 1: 213-2042 bp Neighborhood of RT #1 [213, 2383] RVT-GII Intron_maturas2 Feature: gene Location: 213-341 bp Feature: gene Location: 575-2383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1661 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 39-1661 bp Feature: domain Description: Intron_maturas2 Location: 1787-2042 bp Feature: domain Description: Intron_maturas2 Location: 178 7-2042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: QTMW01000028.1 (70814 bp)
Overview 1 RT 1: 4522-7954 bp 2 RT 2: 12365-21038 bp Neighborhood of RT #1 [4522, 7959] DUF3873 RVT-AbiP2 DUF3872 TraO Neighborhood of RT #2 [12365, 21043] DUF4141 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4134 Feature: gene Location: 4522-4740 bp Feature: domain Description: DUF3873 Location: 4531-4726 bp Feature: domain Description: DUF3873 Location: 4531-4726 bp Feature: gene Location: 4821-5237 bp Feature: gene Location: 5368-6873 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5797-6250 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 579 7-6250 bp Feature: gene Location: 6924-7364 bp Feature: domain Description: DUF3872 Location: 6954-7347 bp Feature: domain Description: DUF3872 Location: 69 54-7347 bp Feature: gene Location: 7378-7959 bp Feature: domain Description: TraO Location: 7456-7954 bp Feature: domain Description: TraO Location: 7456-79 54 bp Feature: gene Location: 12365-12991 bp Feature: domain Description: DUF4141 Location: 12377-12530 bp Feature: domain Description: DUF4141 Location: 12377-12530 bp Feature: gene Location: 13003-13494 bp Feature: domain Description: Bac_Flav_CT_G Location: 13042-13468 bp Feature: domain Description: Bac_Flav_CT_G Location: 13042-13468 bp Feature: gene Location: 13551-15383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13836-14658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13836-14658 bp Feature: domain Description: Intron_maturas2 Location: 14730-15048 bp Feature: domain Description: Intron_maturas2 Location: 14730-15048 bp Feature: domain Description: HNHc Note: nucleases Location: 15204-15354 bp Feature: domain Description: HNHc Note: nucleases Location: 15204-15354 bp Feature: gene Location: 15708-15881 bp Feature: gene Location: 15909-16094 bp Feature: gene Location: 16103-17749 bp Feature: domain Description: RVT_N Location: 16157-16400 bp Feature: domain Description: RVT_N Location: 16157-16400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16445-17090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16445-1709 0 bp Feature: domain Description: GIIM Note: maturase Location: 17144-17375 bp Feature: domain Description: GIIM Note: maturase Location: 17144-17375 bp Feature: gene Location: 18320-20656 bp Feature: domain Description: Bac_Flav_CT_G Location: 18575-20600 bp Feature: domain Description: Bac_Flav_CT_G Location: 18575-20600 bp Feature: gene Location: 20747-21043 bp Feature: domain Description: DUF4134 Location: 20768-21038 bp Feature: domain Description: DUF4134 Location: 20768-21038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3873 (pfam12989), RVT-AbiP2, DUF3872 (pfam12988), TraO (pfam10626), DUF4141 (pfam13605), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RVT_N (pfam13655)
GIIM (pfam08388), DUF4134 (pfam13572)

Seq: QTMW01000021.1 (122782 bp)
Overview 1 RT 1: 102928-115474 bp Neighborhood of RT #1 [102928, 115474] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 102928-104730 bp Feature: domain Description: rpsA Location: 102997-104614 bp Feature: domain Description: rpsA Location: 10 2997-10 4614 bp Feature: gene Location: 104827-110784 bp Feature: domain Description: DUF4011 Location: 106057-106570 bp Feature: domain Description: DUF4011 Location: 10 6057-10 6570 bp Feature: domain Description: DEXXQc_SF1 Location: 106909-107770 bp Feature: domain Description: DEXXQc_SF1 Location: 10 6909-10 7770 bp Feature: domain Description: DEXXQc_SF1 Location: 108337-109096 bp Feature: domain Description: DEXXQc_SF1 Location: 10 8337-10 9096 bp Feature: domain Description: TIGR00376 Location: 109225-109615 bp Feature: domain Description: TIGR00376 Location: 10 9225-10 9615 bp Feature: domain Description: MTES_1575 Location: 109768-110053 bp Feature: domain Description: MTES_1575 Location: 10 9768-110 053 bp Feature: domain Description: DUF3320 Location: 110293-110434 bp Feature: domain Description: DUF3320 Location: 110 293-110 434 bp Feature: gene Location: 110786-111916 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 111107-111650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11110 7-111650 bp Feature: gene Location: 112122-114329 bp Feature: gene Location: 114995-115474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: QTMW01000072.1 (19819 bp)
Overview 1 RT 1: 8956-14765 bp Neighborhood of RT #1 [8956, 14765] HATPase_c_3 TraG-D_C RVT_N RVT-GII GIIM Feature: gene Location: 8956-10950 bp Feature: domain Description: HATPase_c_3 Location: 9016-9385 bp Feature: domain Description: HATPase_c_3 Location: 9016-9385 bp Feature: gene Location: 11064-12269 bp Feature: domain Description: TraG-D_C Location: 11646-11976 bp Feature: domain Description: TraG-D_C Location: 11 646-11 976 bp Feature: gene Location: 12274-13926 bp Feature: domain Description: RVT_N Location: 12328-12571 bp Feature: domain Description: RVT_N Location: 12328-12571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12616-13264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12616-13264 bp Feature: domain Description: GIIM Note: maturase Location: 13318-13549 bp Feature: domain Description: GIIM Note: maturase Location: 13318-13549 bp Feature: gene Location: 14464-14598 bp Feature: gene Location: 14616-14765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HATPase_c_3 (pfam13589), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTMW01000001.1 (400397 bp)
Overview 1 RT 1: 195833-206004 bp Neighborhood of RT #1 [195833, 206042] Laminin_G_3 pfam08757 RVT-DGRs Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 195833-202621 bp Feature: domain Description: Laminin_G_3 Location: 198269-198650 bp Feature: domain Description: Laminin_G_3 Location: 198269-198650 bp Feature: domain Description: pfam08757 Location: 199445-199769 bp Feature: domain Description: pfam08757 Location: 199445-199769 bp Feature: gene Location: 202816-203001 bp Feature: gene Location: 203055-204350 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 203271-203862 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 203271-203862 bp Feature: gene Location: 204352-204846 bp Feature: gene Location: 204897-206042 bp Feature: domain Description: Arm-DNA-bind_5 Location: 204921-205167 bp Feature: domain Description: Arm-DNA-bind_5 Location: 204921-205167 bp Feature: domain Description: Phage_int_SAM_5 Location: 205206-205491 bp Feature: domain Description: Phage_int_SAM_5 Location: 205206-205491 bp Feature: domain Description: INTN1_C_like Location: 205530-206004 bp Feature: domain Description: INTN1_C_like Location: 205530-206004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), RVT-DGRs, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)