myRT

myRT report for GCA_003604045.1_ASM360404v1

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Seq: QTMR01000046.1 (2521 bp)
Overview 1 RT 1: 578-2519 bp Neighborhood of RT #1 [578, 2519] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 578-2386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842-1 664 bp Feature: domain Description: Intron_maturas2 Location: 1760-2099 bp Feature: domain Description: Intron_maturas2 Location: 1 760-2099 bp Feature: domain Description: HNHc Note: nucleases Location: 2207-2360 bp Feature: domain Description: HNHc Note: nucleases Location: 2207-2360 bp Feature: gene Location: 2373-2519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QTMR01000009.1 (248544 bp)
Overview 1 RT 1: 135559-139156 bp Neighborhood of RT #1 [135559, 139156] COG2865 RVT_N RVT-GII GIIM Feature: gene Location: 135559-135930 bp Feature: domain Description: COG2865 Location: 135643-135907 bp Feature: domain Description: COG2 865 Location: 135643-135907 bp Feature: gene Location: 136231-136449 bp Feature: gene Location: 136568-138229 bp Feature: domain Description: RVT_N Location: 136622-136865 bp Feature: domain Description: RVT_N Location: 13662 2 -136865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136910-137558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136910-137558 bp Feature: domain Description: GIIM Note: maturase Location: 137609-137843 bp Feature: domain Description: GIIM Note: maturase Location: 137609-137843 bp Feature: gene Location: 138555-138860 bp Feature: gene Location: 138962-139156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QTMR01000001.1 (729985 bp)
Overview 1 RT 1: 609034-618246 bp Neighborhood of RT #1 [609034, 618257] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4133 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF3876 Feature: gene Location: 609034-609774 bp Feature: gene Location: 609920-610222 bp Feature: domain Description: DUF4134 Location: 609950-610217 bp Feature: domain Description: DUF413 4 Location: 609950-610217 bp Feature: gene Location: 610857-612674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611121-611943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 611121-611943 bp Feature: domain Description: Intron_maturas2 Location: 612018-612345 bp Feature: domain Description: Intron_maturas2 Location: 612018-6123 45 bp Feature: domain Description: HNHc Note: nucleases Location: 612498-612648 bp Feature: domain Description: HNHc Note: nucleases Location: 612498-612648 bp Feature: gene Location: 612584-613057 bp Feature: domain Description: DUF4133 Location: 612788-613016 bp Feature: domain Description: DUF413 3 Location: 612788-613 016 bp Feature: gene Location: 613054-613992 bp Feature: domain Description: Bac_Flav_CT_G Location: 613057-613978 bp Feature: domain Description: Bac_Flav_CT_G Location: 613 057-613 978 bp Feature: gene Location: 614171-614320 bp Feature: gene Location: 614528-616237 bp Feature: domain Description: RVT_N Location: 614630-614873 bp Feature: domain Description: RVT_N Location: 61463 0-614873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614918-615566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 614918-615566 bp Feature: domain Description: GIIM Note: maturase Location: 615620-615851 bp Feature: domain Description: GIIM Note: maturase Location: 615620-615851 bp Feature: gene Location: 616234-617928 bp Feature: domain Description: Bac_Flav_CT_G Location: 616354-617920 bp Feature: domain Description: Bac_Flav_CT_G Location: 6163 54-617920 bp Feature: gene Location: 617943-618257 bp Feature: domain Description: DUF3876 Location: 617997-618246 bp Feature: domain Description: DUF3 876 Location: 617997-618246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571), Bac_Flav_CT_G (TIGR03783), RVT_N (pfam13655), GIIM (pfam08388), DUF3876 (pfam12992)

Seq: QTMR01000005.1 (335729 bp)
Overview 1 RT 1: 20465-27855 bp Neighborhood of RT #1 [20465, 27866] dnaG RVT-UG24 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like HTH_17 Feature: gene Location: 20465-21499 bp Feature: domain Description: dnaG Location: 20552-21455 bp Feature: domain Description: dnaG Location: 20552-214 55 bp Feature: gene Location: 21506-22246 bp Feature: gene Location: 22248-25685 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22758-23223 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 22758-23223 bp Feature: gene Location: 26122-27327 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26155-26371 bp Feature: domain Description: Arm-DNA-bind_5 Location: 26155-26371 bp Feature: domain Description: Phage_int_SAM_5 Location: 26509-26737 bp Feature: domain Description: Phage_int_SAM_5 Location: 26509-26737 bp Feature: domain Description: INTN1_C_like Location: 26809-27313 bp Feature: domain Description: INTN1_C_like Location: 26809-27313 bp Feature: gene Location: 27465-27866 bp Feature: domain Description: HTH_17 Location: 27708-27855 bp Feature: domain Description: HTH_17 Location: 27708-27855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG24, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), HTH_17 (pfam12728)