myRT

myRT report for GCA_003610075.1_ASM361007v1

Download annotations/find similar RTs

Seq: RAIO01000003.1 (2627022 bp)
Overview 1 RT 1: 6905-11519 bp 2 RT 2: 1685794-1690486 bp 3 RT 3: 2592725-2602938 bp Neighborhood of RT #1 [6905, 12127] YhcG HU RVT_N RVT-GII GIIM HNHc KfrA_N Neighborhood of RT #2 [1685794, 1690533] HTH_1 PBP2_NhaR RVT-GII GIIM oxa_formateAnti QdoI Neighborhood of RT #3 [2592725, 2603015] InsE PHA02517 RVT-GII PinE Zn_ribbon_recom Recombinase DUF5372 PinE Zn_ribbon_recom HTH_17 HTH_17 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 6905-7732 bp Feature: domain Description: YhcG Location: 7355-7727 bp Feature: domain Description: YhcG Location: 7355-7727 bp Feature: gene Location: 7729-8007 bp Feature: domain Description: HU Location: 7753-7993 bp Feature: domain Description: HU Location: 7753-7993 bp Feature: gene Location: 8071-9774 bp Feature: domain Description: RVT_N Location: 8125-8368 bp Feature: domain Description: RVT_N Location: 81 25-8368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8413-9052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 3-9052 bp Feature: domain Description: GIIM Note: maturase Location: 9103-9337 bp Feature: domain Description: GIIM Note: maturase Location: 91 03-9337 bp Feature: domain Description: HNHc Note: nucleases Location: 9565-9721 bp Feature: domain Description: HNHc Note: nucleases Location: 9565-9721 bp Feature: gene Location: 10511-10735 bp Feature: gene Location: 11072-12127 bp Feature: domain Description: KfrA_N Location: 11189-11519 bp Feature: domain Description: KfrA_N Location: 1 1 1 89-1 1 51 9 bp Feature: gene Location: 1685794-1686687 bp Feature: domain Description: HTH_1 Location: 1685803-1685980 bp Feature: domain Description: HTH_1 Location: 1 685803-1 685980 bp Feature: domain Description: PBP2_NhaR Location: 1686070-1686679 bp Feature: domain Description: PBP2_NhaR Location: 1 686070-1 686679 bp Feature: gene Location: 1686990-1687202 bp Feature: gene Location: 1687218-1688585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1687545-1688166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 687545-1 6881 66 bp Feature: domain Description: GIIM Note: maturase Location: 1688220-1688427 bp Feature: domain Description: GIIM Note: maturase Location: 1 688220-1 688427 bp Feature: gene Location: 1688818-1690182 bp Feature: domain Description: oxa_formateAnti Location: 1688926-1690138 bp Feature: domain Description: oxa_formateAnti Location: 1 688926-1 6901 38 bp Feature: gene Location: 1690267-1690533 bp Feature: domain Description: QdoI Location: 1690324-1690486 bp Feature: domain Description: QdoI Location: 1 690324-1 690486 bp Feature: gene Location: 2592725-2593045 bp Feature: domain Description: InsE Location: 2592737-2593037 bp Feature: domain Description: InsE Location: 2592737-2593037 bp Feature: gene Location: 2593045-2593503 bp Feature: domain Description: PHA02517 Location: 2593108-2593468 bp Feature: domain Description: PHA0251 7 Location: 25931 08-2593468 bp Feature: gene Location: 2594147-2594458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2594405-2594450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2594405-2594450 bp Feature: gene Location: 2594473-2596539 bp Feature: domain Description: PinE Location: 2594515-2595202 bp Feature: domain Description: PinE Location: 259451 5-2595202 bp Feature: domain Description: Zn_ribbon_recom Location: 2595469-2595646 bp Feature: domain Description: Zn_ribbon_recom Location: 2595469-2595646 bp Feature: domain Description: Recombinase Location: 2596165-2596291 bp Feature: domain Description: Recombinase Location: 25961 65-2596291 bp Feature: gene Location: 2596676-2597008 bp Feature: gene Location: 2597061-2597348 bp Feature: domain Description: DUF5372 Location: 2597079-2597310 bp Feature: domain Description: DUF5372 Location: 2597079-259731 0 bp Feature: gene Location: 2597623-2599845 bp Feature: domain Description: PinE Location: 2597674-2598262 bp Feature: domain Description: PinE Location: 2597674-2598262 bp Feature: domain Description: Zn_ribbon_recom Location: 2598628-2598796 bp Feature: domain Description: Zn_ribbon_recom Location: 2598628-2598796 bp Feature: domain Description: HTH_17 Location: 2599507-2599630 bp Feature: domain Description: HTH_1 7 Location: 2599507-2599630 bp Feature: domain Description: HTH_17 Location: 2599690-2599804 bp Feature: domain Description: HTH_1 7 Location: 2599690-2599804 bp Feature: gene Location: 2600312-2601337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2600324-2600816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2600324-260081 6 bp Feature: domain Description: GIIM Note: maturase Location: 2600912-2601089 bp Feature: domain Description: GIIM Note: maturase Location: 260091 2-2601 089 bp Feature: gene Location: 2601454-2601816 bp Feature: domain Description: PHA02517 Location: 2601457-2601628 bp Feature: domain Description: PHA0251 7 Location: 2601 457-2601 628 bp Feature: gene Location: 2601900-2603015 bp Feature: domain Description: COG3547 Location: 2601942-2602938 bp Feature: domain Description: COG3547 Location: 2601 942-2602938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhcG (COG4804), HU (cd13831), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KfrA_N (pfam11740), HTH_1 (pfam00126), PBP2_NhaR (cd08429), oxa_formateAnti (TIGR04259)
QdoI (COG1917), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), DUF5372 (pfam17342), HTH_17 (pfam12728), COG3547 (Transposase )

Seq: RAIO01000004.1 (1114135 bp)
Overview 1 RT 1: 397132-400713 bp 2 RT 2: 403130-408349 bp 3 RT 3: 662372-666287 bp 4 RT 4: 777857-782385 bp 5 RT 5: 844721-851253 bp 6 RT 6: 988491-993751 bp Neighborhood of RT #1 [397132, 400898] ALDH_F5_SSADH_GabD RVT-GII Resolvase Neighborhood of RT #2 [403130, 408399] Phage_int_SAM_1 INT_RitC_C_like Recombinase Zn_ribbon_recom RVT-GII GIIM Tnp_DNA_bind Dimer_Tnp_Tn5 Y1_Tnp Neighborhood of RT #3 [662372, 666298] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [777857, 782385] HTH_1 PBP2_Pa0477 RVT-Retrons AAA_21 AAA_21 Neighborhood of RT #5 [844721, 851253] RVT-GII GIIM Patatin_and_cPLA2 Neighborhood of RT #6 [988491, 993936] SigE-fam_strep HTH_LUXR RVT-GII HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 RVT-GII GIIM Resolvase Feature: gene Location: 397132-398916 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 397549-398899 bp Feature: domain Description: ALDH_F5_SSADH_GabD Location: 397549-398899 bp Feature: gene Location: 399066-399311 bp Feature: gene Location: 399339-399941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399543-399930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 399543-399930 bp Feature: gene Location: 400072-400257 bp Feature: gene Location: 400254-400898 bp Feature: domain Description: Resolvase Location: 400275-400713 bp Feature: domain Description: Resolvase Location: 4002 75-400713 bp Feature: gene Location: 403130-404122 bp Feature: domain Description: Phage_int_SAM_1 Location: 403169-403409 bp Feature: domain Description: Phage_int_SAM_1 Location: 403169-403409 bp Feature: domain Description: INT_RitC_C_like Location: 403502-404045 bp Feature: domain Description: INT_RitC_C_like Location: 403502 -404045 bp Feature: gene Location: 404165-405544 bp Feature: domain Description: Recombinase Location: 404396-404759 bp Feature: domain Description: Recombinase Location: 404396-404759 bp Feature: domain Description: Zn_ribbon_recom Location: 404804-405008 bp Feature: domain Description: Zn_ribbon_recom Location: 404804-405008 bp Feature: gene Location: 405597-406199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405603-405801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405603-405801 bp Feature: domain Description: GIIM Note: maturase Location: 405879-406107 bp Feature: domain Description: GIIM Note: maturase Location: 405879-406107 bp Feature: gene Location: 406514-407896 bp Feature: domain Description: Tnp_DNA_bind Location: 406541-406709 bp Feature: domain Description: Tnp_DNA_bind Location: 406541-406709 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 407603-407858 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 407603-407858 bp Feature: gene Location: 407956-408399 bp Feature: domain Description: Y1_Tnp Location: 407995-408349 bp Feature: domain Description: Y1_Tnp Location: 407995-408349 bp Feature: gene Location: 662372-662767 bp Feature: gene Location: 662871-663266 bp Feature: domain Description: PHA02517 Location: 662883-663264 bp Feature: domain Description: PHA02 517 Location: 662 883-6632 64 bp Feature: gene Location: 663431-664963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663704-664442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663704-664442 bp Feature: domain Description: GIIM Note: maturase Location: 664538-664715 bp Feature: domain Description: GIIM Note: maturase Location: 664538-664715 bp Feature: gene Location: 665592-666050 bp Feature: domain Description: PHA02517 Location: 665658-666021 bp Feature: domain Description: PHA02 517 Location: 665658-66602 1 bp Feature: gene Location: 666047-666298 bp Feature: domain Description: InsE Location: 666056-666287 bp Feature: domain Description: InsE Location: 666056-6662 87 bp Feature: gene Location: 777857-778837 bp Feature: domain Description: HTH_1 Location: 777926-778103 bp Feature: domain Description: HTH_1 Location: 77792 6-778103 bp Feature: domain Description: PBP2_Pa0477 Location: 778196-778796 bp Feature: domain Description: PBP2 _Pa0477 Location: 778196-778796 bp Feature: gene Location: 778950-779318 bp Feature: gene Location: 779480-780553 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 779714-780272 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 779714-7802 72 bp Feature: gene Location: 780550-781893 bp Feature: domain Description: AAA_21 Location: 780631-780781 bp Feature: domain Description: AAA_2 1 Location: 780631-780781 bp Feature: domain Description: AAA_21 Location: 781123-781294 bp Feature: domain Description: AAA_2 1 Location: 78112 3-7812 94 bp Feature: gene Location: 782224-782385 bp Feature: gene Location: 844721-845305 bp Feature: gene Location: 845506-845655 bp Feature: gene Location: 845657-846901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845861-846515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845861-846515 bp Feature: domain Description: GIIM Note: maturase Location: 846596-846821 bp Feature: domain Description: GIIM Note: maturase Location: 846596-84682 1 bp Feature: gene Location: 846983-850072 bp Feature: domain Description: Patatin_and_cPLA2 Location: 847298-847433 bp Feature: domain Description: Patatin_and_cPLA2 Location: 8472 98-847433 bp Feature: gene Location: 850075-851253 bp Feature: gene Location: 988491-989267 bp Feature: domain Description: SigE-fam_strep Location: 988536-988671 bp Feature: domain Description: SigE-fam_strep Location: 988536-988671 bp Feature: domain Description: HTH_LUXR Location: 989052-989214 bp Feature: domain Description: HTH_LUXR Location: 989052 -9892 14 bp Feature: gene Location: 989658-989903 bp Feature: gene Location: 989931-990527 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990135-990462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 990135-990462 bp Feature: gene Location: 990630-991127 bp Feature: domain Description: HTH_Tnp_1 Location: 990633-990771 bp Feature: domain Description: HTH_Tnp_1 Location: 990633-990771 bp Feature: domain Description: HTH_Tnp_1 Location: 990813-991044 bp Feature: domain Description: HTH_Tnp_1 Location: 990813-991044 bp Feature: gene Location: 991127-992206 bp Feature: domain Description: HTH_23 Location: 991181-991253 bp Feature: domain Description: HTH_2 3 Location: 991181-9912 53 bp Feature: domain Description: Tra5 Location: 991364-992018 bp Feature: domain Description: Tra5 Location: 991364-992 018 bp Feature: gene Location: 992286-992948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992289-992550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992 2 89-992 550 bp Feature: domain Description: GIIM Note: maturase Location: 992628-992856 bp Feature: domain Description: GIIM Note: maturase Location: 992 62 8-992 856 bp Feature: gene Location: 993110-993295 bp Feature: gene Location: 993292-993936 bp Feature: domain Description: Resolvase Location: 993313-993751 bp Feature: domain Description: Resolvase Location: 993313-993751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_F5_SSADH_GabD (cd07103), RVT-GII, Resolvase (smart00857), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), GIIM (pfam08388), Tnp_DNA_bind (pfam14706), Dimer_Tnp_Tn5 (pfam02281)
Y1_Tnp (pfam01797), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), HTH_1 (pfam00126), PBP2_Pa0477 (cd08468), RVT-Retrons, AAA_21 (pfam13304), Patatin_and_cPLA2 (cl11396), SigE-fam_strep (TIGR02983), HTH_LUXR (smart00421)
HTH_Tnp_1 (pfam01527), HTH_23 (pfam13384), Tra5 (COG2801)

Seq: RAIO01000002.1 (3128308 bp)
Overview 1 RT 1: 186680-190856 bp 2 RT 2: 362186-366704 bp 3 RT 3: 1040533-1045044 bp 4 RT 4: 1612325-1614970 bp 5 RT 5: 2049776-2053920 bp 6 RT 6: 2147576-2153439 bp 7 RT 7: 2498416-2502556 bp 8 RT 8: 2897037-2902666 bp Neighborhood of RT #1 [186680, 190861] RVT-GII PRK06761 PHA02517 Neighborhood of RT #2 [362186, 367018] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM RAYT Neighborhood of RT #3 [1040533, 1045073] RVT-GII GIIM prfC Neighborhood of RT #4 [1612325, 1615029] DUF5372 RVT-GII GIIM PHA02517 rve_3 Neighborhood of RT #5 [2049776, 2053958] InsE PHA02517 RVT-GII GIIM PHA02517 COG3436 Neighborhood of RT #6 [2147576, 2153439] InsE RVT-GII DUF346 DUF346 DUF346 DUF346 DUF346 DUF346 Peptidase_C25 Peptidase_C25 Neighborhood of RT #7 [2498416, 2502642] DUF5372 RVT-GII GIIM HNHc DEDD_Tnp_IS110 Transposase_20 COG4312 Neighborhood of RT #8 [2897037, 2903541] DDE_5 RVT-Retrons AAA_15 AAA_15 Feature: gene Location: 186680-186871 bp Feature: gene Location: 187335-187568 bp Feature: gene Location: 187592-189112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188063-188756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188063 -188756 bp Feature: gene Location: 189396-189710 bp Feature: domain Description: PRK06761 Location: 189405-189693 bp Feature: domain Description: PRK06761 Location: 189405-189693 bp Feature: gene Location: 189971-190861 bp Feature: domain Description: PHA02517 Location: 190037-190856 bp Feature: domain Description: PHA02517 Location: 19003 7-190856 bp Feature: gene Location: 362186-362410 bp Feature: gene Location: 362766-364022 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 362805-363270 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3 62805-3 63 270 bp Feature: domain Description: Transposase_20 Location: 363597-363849 bp Feature: domain Description: Transposase_20 Location: 3 63 597-3 63 849 bp Feature: gene Location: 364459-365727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364708-365371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 64708-3 653 71 bp Feature: domain Description: GIIM Note: maturase Location: 365440-365656 bp Feature: domain Description: GIIM Note: maturase Location: 3 65440-3 65656 bp Feature: gene Location: 366012-366305 bp Feature: gene Location: 366302-367018 bp Feature: domain Description: RAYT Location: 366314-366704 bp Feature: domain Description: RAYT Location: 3 663 14-3 66704 bp Feature: gene Location: 1040533-1040760 bp Feature: gene Location: 1041010-1041222 bp Feature: gene Location: 1041238-1042605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041565-1042186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041565-1042186 bp Feature: domain Description: GIIM Note: maturase Location: 1042240-1042447 bp Feature: domain Description: GIIM Note: maturase Location: 1042240-1042447 bp Feature: gene Location: 1042518-1042766 bp Feature: gene Location: 1043472-1045073 bp Feature: domain Description: prfC Location: 1043484-1045044 bp Feature: domain Description: prfC Location: 1043 484-1045044 bp Feature: gene Location: 1612325-1612657 bp Feature: gene Location: 1612710-1613072 bp Feature: domain Description: DUF5372 Location: 1612803-1613034 bp Feature: domain Description: DUF53 72 Location: 1612803 -1613 03 4 bp Feature: gene Location: 1613015-1614040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1613030-1613654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1613 03 0-1613 654 bp Feature: domain Description: GIIM Note: maturase Location: 1613735-1613966 bp Feature: domain Description: GIIM Note: maturase Location: 1613 73 5-1613 966 bp Feature: gene Location: 1614137-1614790 bp Feature: domain Description: PHA02517 Location: 1614203-1614731 bp Feature: domain Description: PHA02517 Location: 1614203 -161473 1 bp Feature: gene Location: 1614823-1615029 bp Feature: domain Description: rve_3 Location: 1614826-1614970 bp Feature: domain Description: rve_3 Location: 1614826-1614970 bp Feature: gene Location: 2049776-2050027 bp Feature: domain Description: InsE Location: 2049785-2050016 bp Feature: domain Description: InsE Location: 2049785-2050016 bp Feature: gene Location: 2050024-2050482 bp Feature: domain Description: PHA02517 Location: 2050090-2050453 bp Feature: domain Description: PHA02517 Location: 2050090-2050453 bp Feature: gene Location: 2051111-2052643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051384-2052122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20513 84-2052122 bp Feature: domain Description: GIIM Note: maturase Location: 2052218-2052395 bp Feature: domain Description: GIIM Note: maturase Location: 2052218-20523 95 bp Feature: gene Location: 2052808-2053203 bp Feature: domain Description: PHA02517 Location: 2052820-2053201 bp Feature: domain Description: PHA02517 Location: 2052820-2053 201 bp Feature: gene Location: 2053242-2053958 bp Feature: domain Description: COG3436 Location: 2053518-2053920 bp Feature: domain Description: COG3 43 6 Location: 2053 518-2053 920 bp Feature: gene Location: 2147576-2147761 bp Feature: gene Location: 2148220-2148639 bp Feature: domain Description: InsE Location: 2148283-2148451 bp Feature: domain Description: InsE Location: 2148283 -2148451 bp Feature: gene Location: 2148752-2150575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2149490-2150180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2149490-2150180 bp Feature: gene Location: 2150855-2153221 bp Feature: domain Description: DUF346 Location: 2150912-2151017 bp Feature: domain Description: DUF3 46 Location: 2150912-2151017 bp Feature: domain Description: DUF346 Location: 2151047-2151155 bp Feature: domain Description: DUF3 46 Location: 2151047-2151155 bp Feature: domain Description: DUF346 Location: 2151185-2151293 bp Feature: domain Description: DUF3 46 Location: 2151185-2151293 bp Feature: domain Description: DUF346 Location: 2151323-2151431 bp Feature: domain Description: DUF3 46 Location: 21513 23 -215143 1 bp Feature: domain Description: DUF346 Location: 2151461-2151569 bp Feature: domain Description: DUF3 46 Location: 2151461-2151569 bp Feature: domain Description: DUF346 Location: 2151599-2151695 bp Feature: domain Description: DUF3 46 Location: 2151599-2151695 bp Feature: domain Description: Peptidase_C25 Location: 2151731-2152670 bp Feature: domain Description: Peptidase_C25 Location: 215173 1-2152670 bp Feature: domain Description: Peptidase_C25 Location: 2152895-2153198 bp Feature: domain Description: Peptidase_C25 Location: 2152895-2153 198 bp Feature: gene Location: 2153278-2153439 bp Feature: gene Location: 2498416-2498748 bp Feature: gene Location: 2498801-2499148 bp Feature: domain Description: DUF5372 Location: 2498879-2499110 bp Feature: domain Description: DUF53 72 Location: 2498879-2499110 bp Feature: gene Location: 2499106-2500449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499121-2499724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499121-2499724 bp Feature: domain Description: GIIM Note: maturase Location: 2499778-2500012 bp Feature: domain Description: GIIM Note: maturase Location: 2499778-2500012 bp Feature: domain Description: HNHc Note: nucleases Location: 2500243-2500393 bp Feature: domain Description: HNHc Note: nucleases Location: 2500243 -25003 93 bp Feature: gene Location: 2500544-2501638 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2500550-2500793 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 2500550-2500793 bp Feature: domain Description: Transposase_20 Location: 2501174-2501423 bp Feature: domain Description: Transposase_20 Location: 2501174-2501423 bp Feature: gene Location: 2501848-2502642 bp Feature: domain Description: COG4312 Location: 2501887-2502556 bp Feature: domain Description: COG43 12 Location: 2501887-2502556 bp Feature: gene Location: 2897037-2898437 bp Feature: domain Description: DDE_5 Location: 2897085-2897805 bp Feature: domain Description: DDE_5 Location: 2897085-2897805 bp Feature: gene Location: 2898581-2898820 bp Feature: gene Location: 2899137-2900378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2899140-2899392 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2899140-28993 92 bp Feature: gene Location: 2900807-2901643 bp Feature: gene Location: 2901784-2903541 bp Feature: domain Description: AAA_15 Location: 2901787-2901916 bp Feature: domain Description: AAA_15 Location: 2901787-2901916 bp Feature: domain Description: AAA_15 Location: 2902447-2902666 bp Feature: domain Description: AAA_15 Location: 2902447-2902666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK06761 (hypothetical protein; Provisional), PHA02517 (putative transposase OrfB; Reviewed), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), GIIM (pfam08388), RAYT (COG1943), prfC (TIGR00503), DUF5372 (pfam17342), rve_3 (pfam13683)
InsE (COG2963), COG3436 (Transposase ), DUF346 (pfam03984), Peptidase_C25 (pfam01364), HNHc (smart00507), COG4312 (Predicted dithiol-disulfide oxidoreductase, DUF899 family ), DDE_5 (pfam13546), RVT-Retrons, AAA_15 (pfam13175)

Seq: RAIO01000001.1 (4587657 bp)
Overview 1 RT 1: 158019-160977 bp 2 RT 2: 196803-201019 bp 3 RT 3: 204586-208576 bp 4 RT 4: 722168-725931 bp 5 RT 5: 2090436-2094210 bp 6 RT 6: 2180189-2182220 bp 7 RT 7: 2967752-2971508 bp 8 RT 8: 2973745-2979704 bp Neighborhood of RT #1 [158019, 160977] INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM DUF5372 Neighborhood of RT #2 [196803, 201019] DDE_3 HTH_23 HTH_33 RVT-GII GIIM RVT-GII GIIM Recombinase Zn_ribbon_recom Neighborhood of RT #3 [204586, 208584] RVT-GII RVT-GII PRK13989 PRK10818 Neighborhood of RT #4 [722168, 725936] rpsI rplM RVT-GII GIIM PRK10738 Neighborhood of RT #5 [2090436, 2094210] GalU RVT-GII GIIM GDPMH Neighborhood of RT #6 [2180189, 2182220] RVT-GII RVT-GII GIIM COG1669 Neighborhood of RT #7 [2967752, 2971508] Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 RVT-GII Neighborhood of RT #8 [2973745, 2979704] Phage_int_SAM_1 INT_RitA_C_like Recombinase Zn_ribbon_recom RVT-GII GIIM DUF4096 Feature: gene Location: 158019-158159 bp Feature: domain Description: INT_RitB_C_like Location: 158025-158124 bp Feature: domain Description: INT_RitB_C_like Location: 158025-158124 bp Feature: gene Location: 158152-159147 bp Feature: domain Description: Phage_int_SAM_1 Location: 158200-158440 bp Feature: domain Description: Phage_int_SAM_1 Location: 158200-1584 4 0 bp Feature: domain Description: INT_RitC_C_like Location: 158533-159067 bp Feature: domain Description: INT_RitC_C_like Location: 158533-159067 bp Feature: gene Location: 159358-160287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159373-160006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 159373-160006 bp Feature: domain Description: GIIM Note: maturase Location: 160075-160213 bp Feature: domain Description: GIIM Note: maturase Location: 160075-160213 bp Feature: gene Location: 160230-160592 bp Feature: domain Description: DUF5372 Location: 160323-160554 bp Feature: domain Description: DUF5372 Location: 160323-160554 bp Feature: gene Location: 160645-160977 bp Feature: gene Location: 196803-197156 bp Feature: domain Description: DDE_3 Location: 196809-197151 bp Feature: domain Description: DDE_3 Location: 196809-197151 bp Feature: gene Location: 197156-197701 bp Feature: domain Description: HTH_23 Location: 197231-197348 bp Feature: domain Description: HTH_23 Location: 197231-19734 8 bp Feature: domain Description: HTH_33 Location: 197492-197642 bp Feature: domain Description: HTH_33 Location: 1974 92-19764 2 bp Feature: gene Location: 197893-199062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198256-198643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198256-19864 3 bp Feature: domain Description: GIIM Note: maturase Location: 198694-198898 bp Feature: domain Description: GIIM Note: maturase Location: 198694 -198898 bp Feature: gene Location: 198873-199493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198906-199212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198906-199212 bp Feature: domain Description: GIIM Note: maturase Location: 199281-199479 bp Feature: domain Description: GIIM Note: maturase Location: 199281-1994 79 bp Feature: gene Location: 199414-200664 bp Feature: domain Description: Recombinase Location: 199495-199858 bp Feature: domain Description: Recombinase Location: 1994 95-199858 bp Feature: domain Description: Zn_ribbon_recom Location: 199897-200086 bp Feature: domain Description: Zn_ribbon_recom Location: 199897-200086 bp Feature: gene Location: 200789-201019 bp Feature: gene Location: 204586-204861 bp Feature: gene Location: 204854-205183 bp Feature: gene Location: 205248-205937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205503-205923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205503-205923 bp Feature: gene Location: 206472-207005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206802-206907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206802-206907 bp Feature: gene Location: 207505-207759 bp Feature: domain Description: PRK13989 Location: 207508-207754 bp Feature: domain Description: PRK13989 Location: 207508-207754 bp Feature: gene Location: 207769-208584 bp Feature: domain Description: PRK10818 Location: 207772-208576 bp Feature: domain Description: PRK10818 Location: 207772-208576 bp Feature: gene Location: 722168-722560 bp Feature: domain Description: rpsI Location: 722180-722558 bp Feature: domain Description: rpsI Location: 722180-722558 bp Feature: gene Location: 722572-723000 bp Feature: domain Description: rplM Location: 722575-722998 bp Feature: domain Description: rplM Location: 722575-722998 bp Feature: gene Location: 723482-724681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723809-724430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 723809-724 4 30 bp Feature: domain Description: GIIM Note: maturase Location: 724484-724652 bp Feature: domain Description: GIIM Note: maturase Location: 724 4 84 -724 652 bp Feature: gene Location: 724697-724909 bp Feature: gene Location: 725535-725936 bp Feature: domain Description: PRK10738 Location: 725547-725931 bp Feature: domain Description: PRK10738 Location: 72554 7-725931 bp Feature: gene Location: 2090436-2091368 bp Feature: domain Description: GalU Location: 2090442-2091303 bp Feature: domain Description: GalU Location: 20904 4 2-2091303 bp Feature: gene Location: 2091754-2091966 bp Feature: gene Location: 2091982-2093349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2092309-2092930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2092309-2092930 bp Feature: domain Description: GIIM Note: maturase Location: 2092984-2093191 bp Feature: domain Description: GIIM Note: maturase Location: 2092984 -2093191 bp Feature: gene Location: 2093515-2094057 bp Feature: domain Description: GDPMH Location: 2093623-2094052 bp Feature: domain Description: GDPMH Location: 2093623-2094 052 bp Feature: gene Location: 2094070-2094210 bp Feature: gene Location: 2180189-2180464 bp Feature: gene Location: 2180607-2180810 bp Feature: gene Location: 2180904-2181125 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2180970-2181117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2180970-2181117 bp Feature: gene Location: 2181141-2181581 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2181147-2181228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 218114 7-2181228 bp Feature: domain Description: GIIM Note: maturase Location: 2181297-2181513 bp Feature: domain Description: GIIM Note: maturase Location: 2181297-2181513 bp Feature: gene Location: 2181718-2181900 bp Feature: domain Description: COG1669 Location: 2181736-2181895 bp Feature: domain Description: COG1669 Location: 2181736-2181895 bp Feature: gene Location: 2182047-2182220 bp Feature: gene Location: 2967752-2967904 bp Feature: gene Location: 2968423-2969754 bp Feature: domain Description: Tnp_DNA_bind Location: 2968444-2968615 bp Feature: domain Description: Tnp_DNA_bind Location: 29684 4 4 -2968615 bp Feature: domain Description: DDE_Tnp_1 Location: 2969320-2969467 bp Feature: domain Description: DDE_Tnp_1 Location: 2969320-29694 67 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2969467-2969710 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 29694 67-2969710 bp Feature: gene Location: 2970148-2970846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2970418-2970832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29704 18-2970832 bp Feature: gene Location: 2970911-2971240 bp Feature: gene Location: 2971233-2971508 bp Feature: gene Location: 2973745-2974983 bp Feature: domain Description: Phage_int_SAM_1 Location: 2974141-2974342 bp Feature: domain Description: Phage_int_SAM_1 Location: 2974 14 1-2974 34 2 bp Feature: domain Description: INT_RitA_C_like Location: 2974438-2974954 bp Feature: domain Description: INT_RitA_C_like Location: 2974 4 38-2974 954 bp Feature: gene Location: 2975286-2976668 bp Feature: domain Description: Recombinase Location: 2975511-2975874 bp Feature: domain Description: Recombinase Location: 2975511-2975874 bp Feature: domain Description: Zn_ribbon_recom Location: 2975913-2976102 bp Feature: domain Description: Zn_ribbon_recom Location: 2975913-2976102 bp Feature: gene Location: 2976769-2977293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2976778-2976874 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2976778-2976874 bp Feature: domain Description: GIIM Note: maturase Location: 2976925-2977129 bp Feature: domain Description: GIIM Note: maturase Location: 2976925-2977129 bp Feature: gene Location: 2977795-2978724 bp Feature: domain Description: DUF4096 Location: 2977813-2978041 bp Feature: domain Description: DUF4 096 Location: 2977813-297804 1 bp Feature: gene Location: 2978976-2979704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), RVT-GII, GIIM (pfam08388), DUF5372 (pfam17342), DDE_3 (pfam13358), HTH_23 (pfam13384), HTH_33 (pfam13592), Recombinase (pfam07508)
Zn_ribbon_recom (pfam13408), PRK13989 (cell division topological specificity factor MinE; Provisional), PRK10818 (septum site-determining protein MinD), rpsI (PRK00132), rplM (PRK09216), PRK10738 (OsmC family protein), GalU (COG1210), GDPMH (cd03430), COG1669 (Predicted nucleotidyltransferase ), Tnp_DNA_bind (pfam14706)
DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), INT_RitA_C_like (cd01188), DUF4096 (pfam13340)