myRT

myRT report for GCA_003610135.1_ASM361013v1

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Seq: RAIM01000002.1 (5007004 bp)
Overview 1 RT 1: 133303-137190 bp 2 RT 2: 754359-758645 bp 3 RT 3: 762877-768908 bp 4 RT 4: 1163331-1167289 bp 5 RT 5: 1873890-1879369 bp 6 RT 6: 2251450-2255866 bp 7 RT 7: 4114005-4119201 bp Neighborhood of RT #1 [133303, 137190] PRK10542 AcrR RVT-GII Neighborhood of RT #2 [754359, 758645] GLY1 RVT_N RVT-GII GIIM Neighborhood of RT #3 [762877, 768913] DUF1330 MarR RVT-Retrons AAA_21 AAA_21 CAP_ED TrxB Neighborhood of RT #4 [1163331, 1167426] HTH_1 PBP2_LTTR_like_2 RVT-GII HTH_LacI PBP1_uncharacterized_sugar_binding Rhizopine-oxygenase-like Neighborhood of RT #5 [1873890, 1879395] QdoI RVT_N RVT-GII GIIM PC_PLC Neighborhood of RT #6 [2251450, 2255967] pepcterm_ATPase RVT_N RVT-GII GIIM Beta-lactamase Neighborhood of RT #7 [4114005, 4119230] OYE_like_FMN 2OG-FeII_Oxy_2 AlkB RVT-GII BON RhaT Feature: gene Location: 133303-133941 bp Feature: domain Description: PRK10542 Location: 133306-133894 bp Feature: domain Description: PRK1 0542 Location: 1 33306-1 33894 bp Feature: gene Location: 134007-134627 bp Feature: domain Description: AcrR Location: 134064-134604 bp Feature: domain Description: AcrR Location: 1 34064-1 34604 bp Feature: gene Location: 134892-136424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135303-135993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35303-1 35993 bp Feature: gene Location: 136421-136633 bp Feature: gene Location: 136822-137190 bp Feature: gene Location: 754359-754913 bp Feature: domain Description: GLY1 Location: 754398-754899 bp Feature: domain Description: GLY1 Location: 754398-754899 bp Feature: gene Location: 755099-755566 bp Feature: gene Location: 755850-757346 bp Feature: domain Description: RVT_N Location: 755913-756150 bp Feature: domain Description: RVT_N Location: 75591 3-7561 50 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756201-756843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756201 -756843 bp Feature: domain Description: GIIM Note: maturase Location: 756897-757128 bp Feature: domain Description: GIIM Note: maturase Location: 756897-7571 28 bp Feature: gene Location: 757609-757965 bp Feature: gene Location: 758376-758645 bp Feature: gene Location: 762877-763170 bp Feature: domain Description: DUF1330 Location: 762883-763162 bp Feature: domain Description: DUF1 330 Location: 762883-7631 62 bp Feature: gene Location: 763153-763686 bp Feature: domain Description: MarR Location: 763309-763669 bp Feature: domain Description: MarR Location: 763309-763669 bp Feature: gene Location: 764406-765374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 764532-765093 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 764532-765093 bp Feature: gene Location: 765371-766714 bp Feature: domain Description: AAA_21 Location: 765452-765602 bp Feature: domain Description: AAA_21 Location: 765452-765602 bp Feature: domain Description: AAA_21 Location: 765944-766115 bp Feature: domain Description: AAA_21 Location: 765944-7661 1 5 bp Feature: gene Location: 767261-768913 bp Feature: domain Description: CAP_ED Location: 767297-767630 bp Feature: domain Description: CAP_ED Location: 767297-767630 bp Feature: domain Description: TrxB Location: 767945-768908 bp Feature: domain Description: TrxB Location: 767945-768908 bp Feature: gene Location: 1163331-1164212 bp Feature: domain Description: HTH_1 Location: 1163340-1163511 bp Feature: domain Description: HTH_1 Location: 1 1 63340-1 1 6351 1 bp Feature: domain Description: PBP2_LTTR_like_2 Location: 1163601-1164174 bp Feature: domain Description: PBP2_LTTR_like_2 Location: 1 1 63601 -1 1 641 74 bp Feature: gene Location: 1164489-1164755 bp Feature: gene Location: 1164815-1165048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164848-1164902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 64848-1 1 64902 bp Feature: gene Location: 1165085-1166110 bp Feature: domain Description: HTH_LacI Location: 1165130-1165235 bp Feature: domain Description: HTH_LacI Location: 1 1 651 30-1 1 65235 bp Feature: domain Description: PBP1_uncharacterized_sugar_binding Location: 1165286-1166087 bp Feature: domain Description: PBP1 _uncharacterized_sugar_binding Location: 1 1 65286-1 1 66087 bp Feature: gene Location: 1166368-1167426 bp Feature: domain Description: Rhizopine-oxygenase-like Location: 1166431-1167289 bp Feature: domain Description: Rhizopine-oxygenase-like Location: 1 1 66431 -1 1 67289 bp Feature: gene Location: 1873890-1874156 bp Feature: domain Description: QdoI Location: 1873947-1874109 bp Feature: domain Description: QdoI Location: 1 873947-1 8741 09 bp Feature: gene Location: 1874233-1874625 bp Feature: gene Location: 1874905-1876401 bp Feature: domain Description: RVT_N Location: 1874968-1875205 bp Feature: domain Description: RVT_N Location: 1 874968-1 875205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1875256-1875898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 875256-1 875898 bp Feature: domain Description: GIIM Note: maturase Location: 1875952-1876183 bp Feature: domain Description: GIIM Note: maturase Location: 1 875952-1 8761 83 bp Feature: gene Location: 1876664-1877107 bp Feature: gene Location: 1877242-1879395 bp Feature: domain Description: PC_PLC Location: 1877257-1879369 bp Feature: domain Description: PC_PLC Location: 1 877257-1 879369 bp Feature: gene Location: 2251450-2252244 bp Feature: domain Description: pepcterm_ATPase Location: 2251453-2252236 bp Feature: domain Description: pepcterm_ATPase Location: 2251 453-2252236 bp Feature: gene Location: 2252241-2252480 bp Feature: gene Location: 2252507-2254051 bp Feature: domain Description: RVT_N Location: 2252735-2252855 bp Feature: domain Description: RVT_N Location: 2252735-2252855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2252906-2253548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2252906-2253548 bp Feature: domain Description: GIIM Note: maturase Location: 2253602-2253833 bp Feature: domain Description: GIIM Note: maturase Location: 2253602-2253833 bp Feature: gene Location: 2254334-2254801 bp Feature: gene Location: 2255092-2255967 bp Feature: domain Description: Beta-lactamase Location: 2255164-2255866 bp Feature: domain Description: Beta-lactamase Location: 22551 64-2255866 bp Feature: gene Location: 4114005-4115117 bp Feature: domain Description: OYE_like_FMN Location: 4114041-4115046 bp Feature: domain Description: OYE_like_FMN Location: 41 1 4041 -41 1 5046 bp Feature: gene Location: 4115193-4115774 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 4115259-4115391 bp Feature: domain Description: 2OG-FeII_Oxy_2 Location: 41 1 5259-41 1 5391 bp Feature: domain Description: AlkB Location: 4115424-4115751 bp Feature: domain Description: AlkB Location: 41 1 5424-41 1 5751 bp Feature: gene Location: 4116168-4117751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4116630-4117320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 6630-41 1 7320 bp Feature: gene Location: 4117812-4118171 bp Feature: domain Description: BON Location: 4117953-4118148 bp Feature: domain Description: BON Location: 41 1 7953-41 1 81 48 bp Feature: gene Location: 4118331-4119230 bp Feature: domain Description: RhaT Location: 4118376-4119201 bp Feature: domain Description: RhaT Location: 41 1 8376-41 1 9201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10542 (glutathionine S-transferase; Provisional), AcrR (COG1309), RVT-GII, GLY1 (COG2008), RVT_N (pfam13655), GIIM (pfam08388), DUF1330 (pfam07045), MarR (pfam01047), RVT-Retrons, AAA_21 (pfam13304)
CAP_ED (cl00047), TrxB (COG0492), HTH_1 (pfam00126), PBP2_LTTR_like_2 (cd08427), HTH_LacI (cd01392), PBP1_uncharacterized_sugar_binding, Rhizopine-oxygenase-like (cd03511), QdoI (COG1917), PC_PLC (TIGR03396), pepcterm_ATPase (TIGR03015)
Beta-lactamase (pfam00144), OYE_like_FMN (cd02933), 2OG-FeII_Oxy_2 (pfam13532), AlkB (COG3145), BON (smart00749), RhaT (TIGR00776)

Seq: RAIM01000001.1 (5711254 bp)
Overview 1 RT 1: 805889-811203 bp 2 RT 2: 1332593-1339638 bp 3 RT 3: 1852193-1856889 bp 4 RT 4: 3005987-3009553 bp 5 RT 5: 3544685-3549334 bp 6 RT 6: 3874395-3881388 bp 7 RT 7: 5609149-5615327 bp Neighborhood of RT #1 [805889, 811286] RVT_N RVT-GII GIIM PRK15048 Neighborhood of RT #2 [1332593, 1339638] COG4913 COG4924 RVT-Retrons Neighborhood of RT #3 [1852193, 1857437] RVT-Retrons LprI Neighborhood of RT #4 [3005987, 3009553] DUF2471 RVT-GII PHA00684 Neighborhood of RT #5 [3544685, 3550038] RVT-GII COG4544 PolY_like Neighborhood of RT #6 [3874395, 3881393] RVT-GII GIIM HemolysinCabind HCBP_related HemolysinCabind HCBP_related HemolysinCabind HCBP_related type_I_sec_HlyB Neighborhood of RT #7 [5609149, 5615365] TauD Arabinose_bd HTH_ARAC RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 805889-806272 bp Feature: gene Location: 806593-807063 bp Feature: gene Location: 807348-808844 bp Feature: domain Description: RVT_N Location: 807411-807648 bp Feature: domain Description: RVT_N Location: 807411-807648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807699-808341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 807699-808341 bp Feature: domain Description: GIIM Note: maturase Location: 808395-808626 bp Feature: domain Description: GIIM Note: maturase Location: 808395-80862 6 bp Feature: gene Location: 809107-809508 bp Feature: gene Location: 809646-811286 bp Feature: domain Description: PRK15048 Location: 809685-811203 bp Feature: domain Description: PRK15048 Location: 809685-8112 03 bp Feature: gene Location: 1332593-1335967 bp Feature: domain Description: COG4913 Location: 1332617-1335953 bp Feature: domain Description: COG4913 Location: 1332 617-1335953 bp Feature: gene Location: 1335964-1337139 bp Feature: domain Description: COG4924 Location: 1335973-1337134 bp Feature: domain Description: COG492 4 Location: 1335973-1337134 bp Feature: gene Location: 1337553-1338896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1338021-1338657 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 133802 1-1338657 bp Feature: gene Location: 1338970-1339383 bp Feature: gene Location: 1339435-1339638 bp Feature: gene Location: 1852193-1852579 bp Feature: gene Location: 1852557-1852880 bp Feature: gene Location: 1854503-1855480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1854653-1855178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1854653-1855178 bp Feature: gene Location: 1856041-1856601 bp Feature: gene Location: 1856598-1857437 bp Feature: domain Description: LprI Location: 1856607-1856889 bp Feature: domain Description: LprI Location: 1856607-1856889 bp Feature: gene Location: 3005987-3006391 bp Feature: domain Description: DUF2471 Location: 3006017-3006374 bp Feature: domain Description: DUF2 471 Location: 3006017-3006374 bp Feature: gene Location: 3006430-3006711 bp Feature: gene Location: 3007067-3008650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3007529-3008219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 300752 9-30082 19 bp Feature: gene Location: 3008840-3009274 bp Feature: domain Description: PHA00684 Location: 3008843-3008930 bp Feature: domain Description: PHA00684 Location: 3008843-3008930 bp Feature: gene Location: 3009341-3009553 bp Feature: gene Location: 3544685-3544945 bp Feature: gene Location: 3545038-3545247 bp Feature: gene Location: 3545830-3547413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3546292-3546982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35462 92 -3546982 bp Feature: gene Location: 3547503-3548342 bp Feature: domain Description: COG4544 Location: 3547560-3548112 bp Feature: domain Description: COG4544 Location: 3547560-3548112 bp Feature: gene Location: 3548242-3550038 bp Feature: domain Description: PolY_like Location: 3548359-3549334 bp Feature: domain Description: PolY_like Location: 3548359-3549334 bp Feature: gene Location: 3874395-3875732 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874746-3875367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3874746-3875367 bp Feature: domain Description: GIIM Note: maturase Location: 3875418-3875631 bp Feature: domain Description: GIIM Note: maturase Location: 3875418-3875631 bp Feature: gene Location: 3875717-3879136 bp Feature: domain Description: HemolysinCabind Location: 3877673-3877778 bp Feature: domain Description: HemolysinCabind Location: 3877673-3877778 bp Feature: domain Description: HCBP_related Location: 3877970-3878105 bp Feature: domain Description: HCBP_related Location: 3877970-3878105 bp Feature: domain Description: HemolysinCabind Location: 3878132-3878231 bp Feature: domain Description: HemolysinCabind Location: 3878132 -38782 31 bp Feature: domain Description: HCBP_related Location: 3878372-3878507 bp Feature: domain Description: HCBP_related Location: 3878372 -3878507 bp Feature: domain Description: HemolysinCabind Location: 3878534-3878633 bp Feature: domain Description: HemolysinCabind Location: 3878534-3878633 bp Feature: domain Description: HCBP_related Location: 3878774-3878912 bp Feature: domain Description: HCBP_related Location: 3878774-3878912 bp Feature: gene Location: 3879216-3881393 bp Feature: domain Description: type_I_sec_HlyB Location: 3879306-3881388 bp Feature: domain Description: type_I_sec_HlyB Location: 3879306-3881388 bp Feature: gene Location: 5609149-5610000 bp Feature: domain Description: TauD Location: 5609341-5609983 bp Feature: domain Description: TauD Location: 5609341-5609983 bp Feature: gene Location: 5610113-5611111 bp Feature: domain Description: Arabinose_bd Location: 5610176-5610716 bp Feature: domain Description: Arabinose_bd Location: 5610176-5610716 bp Feature: domain Description: HTH_ARAC Location: 5610848-5611079 bp Feature: domain Description: HTH_ARAC Location: 5610848-5611079 bp Feature: gene Location: 5611322-5612644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5611625-5612261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561162 5-5612 2 61 bp Feature: domain Description: GIIM Note: maturase Location: 5612339-5612558 bp Feature: domain Description: GIIM Note: maturase Location: 5612 339-5612 558 bp Feature: gene Location: 5613487-5613723 bp Feature: gene Location: 5613800-5615365 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5613905-5614124 bp Feature: domain Description: LZ_Tnp_IS66 Location: 5613905-561412 4 bp Feature: domain Description: zf-IS66 Location: 5614148-5614280 bp Feature: domain Description: zf-IS66 Location: 5614148-56142 80 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5614328-5615192 bp Feature: domain Description: DDE_Tnp_IS66 Location: 561432 8-5615192 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5615213-5615327 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 56152 13-561532 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK15048 (methyl-accepting chemotaxis protein II; Provisional), COG4913 (Uncharacterized protein, contains a C-terminal ATPase domain ), COG4924 (Uncharacterized protein ), RVT-Retrons, LprI (pfam07007), DUF2471 (pfam10616), PHA00684 (hypothetical protein)
COG4544 (Uncharacterized conserved protein ), PolY_like (cd03468), HemolysinCabind (pfam00353), HCBP_related (pfam06594), type_I_sec_HlyB (TIGR01846), TauD (pfam02668), Arabinose_bd (pfam12625), HTH_ARAC (smart00342), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)