myRT

myRT report for GCA_003610915.1_Rvar_CIP

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Seq: NSDJ01000002.1 (742735 bp)
Overview 1 RT 1: 691366-695222 bp Neighborhood of RT #1 [691366, 695305] W phage_P2_V RVT-Retrons Phage_tail_S P2_Phage_GpR Feature: gene Location: 691366-691716 bp Feature: domain Description: W Location: 691396-691699 bp Feature: domain Description: W Location: 691 396-691 699 bp Feature: gene Location: 691713-692354 bp Feature: domain Description: phage_P2_V Location: 691749-692340 bp Feature: domain Description: phage_P2_V Location: 691 749-692340 bp Feature: gene Location: 692663-694351 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 692801-693419 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 692801 -69341 9 bp Feature: gene Location: 694390-694770 bp Feature: domain Description: Phage_tail_S Location: 694393-694756 bp Feature: domain Description: Phage_tail_S Location: 694393-694756 bp Feature: gene Location: 694838-695305 bp Feature: domain Description: P2_Phage_GpR Location: 694841-695222 bp Feature: domain Description: P2_Phage_GpR Location: 694841 -695222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT W (PHA02516), phage_P2_V (TIGR01644), RVT-Retrons, Phage_tail_S (pfam05069), P2_Phage_GpR (pfam06891)

Seq: NSDJ01000001.1 (4756373 bp)
Overview 1 RT 1: 13352-17559 bp 2 RT 2: 1795640-1801160 bp 3 RT 3: 2450514-2456751 bp 4 RT 4: 4746933-4751140 bp Neighborhood of RT #1 [13352, 17559] PRK09810 RVT-Retrons Neighborhood of RT #2 [1795640, 1801198] RVT-UG28 Prim_Zn_Ribbon TOPRIM_primases COG3378 DUF5375 Neighborhood of RT #3 [2450514, 2456765] Phage_CI_repr Phage_CI_repr Phage_CI_C COG3950 RVT-Retrons COG3921 Neighborhood of RT #4 [4746933, 4751140] PRK09810 RVT-Retrons Feature: gene Location: 13352-13687 bp Feature: domain Description: PRK09810 Location: 13355-13409 bp Feature: domain Description: PRK09810 Location: 13355-13409 bp Feature: gene Location: 13766-14401 bp Feature: gene Location: 14439-15752 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14970-15522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14970-1552 2 bp Feature: gene Location: 15863-16522 bp Feature: gene Location: 17209-17559 bp Feature: gene Location: 1795640-1795918 bp Feature: gene Location: 1796103-1796243 bp Feature: gene Location: 1796358-1797980 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1796769-1797405 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 1796769-1797405 bp Feature: gene Location: 1798515-1800845 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1798614-1798719 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1798614-1798719 bp Feature: domain Description: TOPRIM_primases Location: 1799151-1799376 bp Feature: domain Description: TOPRIM_primases Location: 1799151-1799376 bp Feature: domain Description: COG3378 Location: 1799376-1800834 bp Feature: domain Description: COG3378 Location: 1799376-1800834 bp Feature: gene Location: 1800857-1801198 bp Feature: domain Description: DUF5375 Location: 1800881-1801160 bp Feature: domain Description: DUF5375 Location: 1800881-1801160 bp Feature: gene Location: 2450514-2451380 bp Feature: domain Description: Phage_CI_repr Location: 2450547-2450724 bp Feature: domain Description: Phage_CI_repr Location: 2 450547-2 45072 4 bp Feature: domain Description: Phage_CI_repr Location: 2450826-2451006 bp Feature: domain Description: Phage_CI_repr Location: 2 45082 6-2 451006 bp Feature: domain Description: Phage_CI_C Location: 2451057-2451354 bp Feature: domain Description: Phage_CI_C Location: 2 451057-2 451354 bp Feature: gene Location: 2452244-2453878 bp Feature: domain Description: COG3950 Location: 2452421-2453591 bp Feature: domain Description: COG3950 Location: 2 452 42 1-2 453591 bp Feature: gene Location: 2453865-2454809 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2453967-2454564 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 453967-2 454564 bp Feature: gene Location: 2455542-2455760 bp Feature: gene Location: 2456067-2456765 bp Feature: domain Description: COG3921 Location: 2456142-2456751 bp Feature: domain Description: COG392 1 Location: 2 456142 -2 456751 bp Feature: gene Location: 4746933-4747268 bp Feature: domain Description: PRK09810 Location: 4746936-4746990 bp Feature: domain Description: PRK09810 Location: 4746936-4746990 bp Feature: gene Location: 4747347-4747982 bp Feature: gene Location: 4748020-4749333 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4748551-4749103 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4748551-4749103 bp Feature: gene Location: 4749444-4750103 bp Feature: gene Location: 4750790-4751140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09810 (lipoprotein antitoxin entericidin A), RVT-Retrons, RVT-UG28, Prim_Zn_Ribbon (smart00778), TOPRIM_primases (cd01029), COG3378 (Phage- or plasmid-associated DNA primase ), DUF5375 (pfam17345), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452), COG3950 (Predicted ATP-binding protein involved in virulence )
COG3921 (Uncharacterized conserved protein )