myRT

myRT report for GCA_003611745.1_ASM361174v1

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Seq: RAYF01000171.1 (1516 bp)
Overview 1 RT 1: 1-1515 bp Neighborhood of RT #1 [1, 1515] RVT-UNC Feature: gene Location: 1-1071 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 169-397 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 69-397 bp Feature: gene Location: 1306-1515 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG19/RVT-UG10/RVT-UG4/RVT-UG2(RVT-UNC)

Seq: RAYF01000077.1 (20735 bp)
Overview 1 RT 1: 3204-7677 bp Neighborhood of RT #1 [3204, 7745] rplI PRK05748 RVT-GII GIIM MltE Feature: gene Location: 3204-3650 bp Feature: domain Description: rplI Location: 3207-3645 bp Feature: domain Description: rplI Location: 32 07-3645 bp Feature: gene Location: 3711-5087 bp Feature: domain Description: PRK05748 Location: 3750-5079 bp Feature: domain Description: PRK05748 Location: 3750-5079 bp Feature: gene Location: 5185-6597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5536-6157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5536-6157 bp Feature: domain Description: GIIM Note: maturase Location: 6211-6436 bp Feature: domain Description: GIIM Note: maturase Location: 62 11-6436 bp Feature: gene Location: 6603-6845 bp Feature: gene Location: 7017-7745 bp Feature: domain Description: MltE Location: 7272-7677 bp Feature: domain Description: MltE Location: 72 72 -7677 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rplI (PRK00137), PRK05748 (replicative DNA helicase; Provisional), RVT-GII, GIIM (pfam08388), MltE (COG0741)

Seq: RAYF01000080.1 (19012 bp)
Overview 1 RT 1: 5613-17100 bp Neighborhood of RT #1 [5613, 17765] sigma70-ECF SR_TndX_transposase Recombinase Zn_ribbon_recom DUF4368 RVT_N RVT-GII GIIM RVT-GII Intron_maturas2 CENP-F_leu_zip RadC YodL Peptidase_M78 NT_KNTase_like LPD16 Feature: gene Location: 5613-6038 bp Feature: domain Description: sigma70-ECF Location: 5751-6036 bp Feature: domain Description: sigma70-ECF Location: 5751-603 6 bp Feature: gene Location: 6172-7920 bp Feature: domain Description: SR_TndX_transposase Location: 6175-6295 bp Feature: domain Description: SR_TndX_transposase Location: 6175-6295 bp Feature: domain Description: Recombinase Location: 6400-6775 bp Feature: domain Description: Recombinase Location: 6400-6775 bp Feature: domain Description: Zn_ribbon_recom Location: 6814-7006 bp Feature: domain Description: Zn_ribbon_recom Location: 6814-7006 bp Feature: domain Description: DUF4368 Location: 7282-7477 bp Feature: domain Description: DUF43 68 Location: 7282-7477 bp Feature: gene Location: 8414-10087 bp Feature: domain Description: RVT_N Location: 8459-8702 bp Feature: domain Description: RVT_N Location: 8459-8702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8747-9395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8747-93 95 bp Feature: domain Description: GIIM Note: maturase Location: 9449-9680 bp Feature: domain Description: GIIM Note: maturase Location: 9449-9680 bp Feature: gene Location: 10088-10330 bp Feature: gene Location: 10879-12771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11200-12040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11200-12040 bp Feature: domain Description: Intron_maturas2 Location: 12118-12436 bp Feature: domain Description: Intron_maturas2 Location: 12118-1243 6 bp Feature: gene Location: 12886-14286 bp Feature: domain Description: CENP-F_leu_zip Location: 13297-13471 bp Feature: domain Description: CENP-F_leu_zip Location: 13 297-13 471 bp Feature: gene Location: 14412-17765 bp Feature: domain Description: RadC Location: 14499-14853 bp Feature: domain Description: RadC Location: 14499-14853 bp Feature: domain Description: YodL Location: 14988-15282 bp Feature: domain Description: YodL Location: 14988-15282 bp Feature: domain Description: Peptidase_M78 Location: 16026-16218 bp Feature: domain Description: Peptidase_M78 Location: 16026-16218 bp Feature: domain Description: NT_KNTase_like Location: 16569-16785 bp Feature: domain Description: NT_KNTase_like Location: 16569-16785 bp Feature: domain Description: LPD16 Location: 16833-17100 bp Feature: domain Description: LPD16 Location: 1683 3 -17100 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sigma70-ECF (TIGR02937), SR_TndX_transposase (cd03770), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DUF4368 (pfam14287), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Intron_maturas2 (pfam01348), CENP-F_leu_zip (pfam10473)
RadC (pfam04002), YodL (pfam14191), Peptidase_M78 (pfam06114), NT_KNTase_like (cd05403), LPD16 (pfam18830)

Seq: RAYF01000109.1 (8671 bp)
Overview 1 RT 1: 393-3350 bp Neighborhood of RT #1 [393, 3350] TraG-D_C RVT-GII Intron_maturas2 Feature: gene Location: 393-563 bp Feature: domain Description: TraG-D_C Location: 396-540 bp Feature: domain Description: TraG-D_C Location: 396-54 0 bp Feature: gene Location: 755-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1019-1850 bp Feature: domain Description: Intron_maturas2 Location: 1919-2249 bp Feature: domain Description: Intron_maturas2 Location: 1919-224 9 bp Feature: gene Location: 2565-2705 bp Feature: gene Location: 3162-3350 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG-D_C (pfam12696), RVT-GII, Intron_maturas2 (pfam01348)

Seq: RAYF01000195.1 (1178 bp)
Overview 1 RT 1: 3-1026 bp Neighborhood of RT #1 [3, 1175] RVT-GII Feature: gene Location: 3-1175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192-1026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192-1026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RAYF01000205.1 (891 bp)
Overview 1 RT 1: 1-890 bp Neighborhood of RT #1 [1, 890] RVT-GII Feature: gene Location: 1-480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232-478 bp Feature: gene Location: 627-890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: RAYF01000047.1 (49510 bp)
Overview 1 RT 1: 1-2340 bp Neighborhood of RT #1 [1, 2340] RVT-GII Intron_maturas2 Feature: gene Location: 1-1749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193-1027 bp Feature: domain Description: Intron_maturas2 Location: 1162-1402 bp Feature: domain Description: Intron_maturas2 Location: 1162-1402 bp Feature: gene Location: 1759-2160 bp Feature: gene Location: 2170-2340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: RAYF01000187.1 (1452 bp)
Overview 1 RT 1: 3-984 bp Neighborhood of RT #1 [3, 1436] RVT-UNC Feature: gene Location: 3-1436 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 747-984 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 747-98 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-UG19/RVT-UG2/RVT-UG17(RVT-UNC)

Seq: RAYF01000121.1 (6489 bp)
Overview 1 RT 1: 1860-6238 bp Neighborhood of RT #1 [1860, 6261] VirD4 RVT-GII HNHc TraG-D_C Feature: gene Location: 1860-2714 bp Feature: domain Description: VirD4 Location: 2175-2667 bp Feature: domain Description: VirD4 Location: 2175-2667 bp Feature: gene Location: 2922-3269 bp Feature: gene Location: 3420-5327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3759-4506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3759 -4506 bp Feature: domain Description: HNHc Note: nucleases Location: 5073-5211 bp Feature: domain Description: HNHc Note: nucleases Location: 5073-5211 bp Feature: gene Location: 5372-5539 bp Feature: gene Location: 5563-6261 bp Feature: domain Description: TraG-D_C Location: 5989-6238 bp Feature: domain Description: TraG-D_C Location: 59 89 -6238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696)

Seq: RAYF01000149.1 (2686 bp)
Overview 1 RT 1: 37-2239 bp Neighborhood of RT #1 [37, 2239] RVT-GII Feature: gene Location: 37-1974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-1066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367-10 66 bp Feature: gene Location: 2063-2239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII