myRT

myRT report for GCA_003611865.1_ASM361186v1

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Seq: RAYT01000003.1 (148628 bp)
Overview 1 RT 1: 81094-92549 bp Neighborhood of RT #1 [81094, 92549] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons Feature: gene Location: 81094-82893 bp Feature: domain Description: rpsA Location: 81163-82765 bp Feature: domain Description: rpsA Location: 81 1 63-82765 bp Feature: gene Location: 82990-89022 bp Feature: domain Description: DUF4011 Location: 84220-84733 bp Feature: domain Description: DUF401 1 Location: 84220-84733 bp Feature: domain Description: DEXXQc_SF1 Location: 85072-85501 bp Feature: domain Description: DEXXQc_SF1 Location: 85072-85501 bp Feature: domain Description: DEXXQc_SF1 Location: 86500-87259 bp Feature: domain Description: DEXXQc_SF1 Location: 86500-87259 bp Feature: domain Description: TIGR00376 Location: 87388-87778 bp Feature: domain Description: TIGR00376 Location: 87388-87778 bp Feature: domain Description: MTES_1575 Location: 87931-88216 bp Feature: domain Description: MTES_1 575 Location: 87931 -8821 6 bp Feature: domain Description: DUF3320 Location: 88537-88672 bp Feature: domain Description: DUF3320 Location: 88537-88672 bp Feature: gene Location: 89059-89847 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89065-89581 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 89065-89581 bp Feature: gene Location: 89831-90184 bp Feature: gene Location: 90390-92549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons

Seq: RAYT01000521.1 (1897 bp)
Overview 1 RT 1: 79-1894 bp Neighborhood of RT #1 [79, 1894] RVT-GII GIIM Feature: gene Location: 79-1347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 -949 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1237 bp Feature: domain Description: GIIM Note: maturase Location: 1030-12 37 bp Feature: gene Location: 1370-1603 bp Feature: gene Location: 1664-1894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RAYT01000008.1 (114995 bp)
Overview 1 RT 1: 66571-71442 bp Neighborhood of RT #1 [66571, 71537] SGSH Glyco_hydro_88 RVT-GII ABC_cobalt_CbiO_domain1 AAA_15 Feature: gene Location: 66571-68115 bp Feature: domain Description: SGSH Location: 66688-68011 bp Feature: domain Description: SGSH Location: 66688-68011 bp Feature: gene Location: 68138-69256 bp Feature: domain Description: Glyco_hydro_88 Location: 68330-69245 bp Feature: domain Description: Glyco_hydro_88 Location: 683 3 0-69245 bp Feature: gene Location: 69707-70042 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69983-70037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69983 -7003 7 bp Feature: gene Location: 70161-70349 bp Feature: gene Location: 70674-71537 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 70764-70875 bp Feature: domain Description: ABC_cobalt_CbiO_domain1 Location: 70764-70875 bp Feature: domain Description: AAA_15 Location: 71061-71442 bp Feature: domain Description: AAA_15 Location: 71061-71442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SGSH (cd16027), Glyco_hydro_88 (pfam07470), RVT-GII, ABC_cobalt_CbiO_domain1 (cd03225), AAA_15 (pfam13175)

Seq: RAYT01000361.1 (9931 bp)
Overview 1 RT 1: 2144-5767 bp Neighborhood of RT #1 [2144, 5767] RVT-DGRs Feature: gene Location: 2144-2530 bp Feature: gene Location: 2527-2958 bp Feature: gene Location: 2918-4078 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3221-3848 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3221-384 8 bp Feature: gene Location: 4205-4345 bp Feature: gene Location: 4409-5767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: RAYT01000583.1 (764 bp)
Overview 1 RT 1: 51-309 bp Neighborhood of RT #1 [51, 761] RVT-UNC Feature: gene Location: 51-761 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 75-309 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 75 -309 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-UG19/RVT-UG17/RVT-GII(RVT-UNC)

Seq: RAYT01000032.1 (85801 bp)
Overview 1 RT 1: 47614-51482 bp Neighborhood of RT #1 [47614, 51496] SpmA SpmB TIGR00043 RVT-GII GIIM DUF3791 Feature: gene Location: 47614-48846 bp Feature: domain Description: SpmA Location: 47623-48223 bp Feature: domain Description: SpmA Location: 476 23-48223 bp Feature: domain Description: SpmB Location: 48358-48841 bp Feature: domain Description: SpmB Location: 48358-48841 bp Feature: gene Location: 48863-49282 bp Feature: domain Description: TIGR00043 Location: 48974-49271 bp Feature: domain Description: TIGR00043 Location: 48974-49271 bp Feature: gene Location: 49449-50855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49791-50409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49791-50409 bp Feature: domain Description: GIIM Note: maturase Location: 50466-50694 bp Feature: domain Description: GIIM Note: maturase Location: 5046 6 -506 94 bp Feature: gene Location: 51024-51152 bp Feature: gene Location: 51281-51496 bp Feature: domain Description: DUF3791 Location: 51302-51482 bp Feature: domain Description: DUF3791 Location: 51302-51482 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpmA (COG2715), SpmB (COG0700), TIGR00043 (rRNA maturation RNase YbeY), RVT-GII, GIIM (pfam08388), DUF3791 (pfam12668)

Seq: RAYT01000020.1 (106822 bp)
Overview 1 RT 1: 76358-80200 bp Neighborhood of RT #1 [76358, 80200] INTN1_C_like RVT_N RVT-GII GIIM Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 76358-76669 bp Feature: domain Description: INTN1_C_like Location: 76436-76622 bp Feature: domain Description: INTN1_C_like Location: 7 6436-7 6622 bp Feature: gene Location: 76694-76903 bp Feature: gene Location: 77185-78840 bp Feature: domain Description: RVT_N Location: 77242-77479 bp Feature: domain Description: RVT_N Location: 7 7 242-7 7 47 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77530-78178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 7 530-7 817 8 bp Feature: domain Description: GIIM Note: maturase Location: 78235-78466 bp Feature: domain Description: GIIM Note: maturase Location: 7 8235-7 8466 bp Feature: gene Location: 78937-80004 bp Feature: domain Description: Arm-DNA-bind_5 Location: 78970-79216 bp Feature: domain Description: Arm-DNA-bind_5 Location: 7 897 0-7 9216 bp Feature: domain Description: Phage_int_SAM_5 Location: 79267-79570 bp Feature: domain Description: Phage_int_SAM_5 Location: 7 9267 -7 957 0 bp Feature: domain Description: INTN1_C_like Location: 79621-79969 bp Feature: domain Description: INTN1_C_like Location: 7 9621-7 9969 bp Feature: gene Location: 80018-80200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102)