myRT

myRT report for GCA_003612335.1_ASM361233v1

Download annotations/find similar RTs

Seq: RAYO01000081.1 (5473 bp)
Overview 1 RT 1: 1813-5138 bp Neighborhood of RT #1 [1813, 5170] RVT-GII PRK15121 Acetyltransf_10 MATE_MepA_like Feature: gene Location: 1813-1971 bp Feature: gene Location: 2143-2301 bp Feature: gene Location: 2346-2933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2685-2841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2685-2841 bp Feature: gene Location: 2986-3843 bp Feature: domain Description: PRK15121 Location: 3022-3376 bp Feature: domain Description: PRK1 51 21 Location: 3022-3376 bp Feature: domain Description: Acetyltransf_10 Location: 3487-3715 bp Feature: domain Description: Acetyltransf_1 0 Location: 3487-371 5 bp Feature: gene Location: 3836-5170 bp Feature: domain Description: MATE_MepA_like Location: 3878-5138 bp Feature: domain Description: MATE_MepA_like Location: 3878-51 38 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK15121 (MDR efflux pump AcrAB transcriptional activator RobA), Acetyltransf_10 (pfam13673), MATE_MepA_like (cd13143)

Seq: RAYO01000042.1 (13630 bp)
Overview 1 RT 1: 7783-13150 bp Neighborhood of RT #1 [7783, 13314] CcmA HTH_BmrR RVT-GII Intron_maturas2 HNHc PAPS_reductase PRK13794 Feature: gene Location: 7783-8634 bp Feature: domain Description: CcmA Location: 7786-8482 bp Feature: domain Description: CcmA Location: 7786-8482 bp Feature: gene Location: 8747-9532 bp Feature: domain Description: HTH_BmrR Location: 8765-9068 bp Feature: domain Description: HTH_BmrR Location: 8765-9068 bp Feature: gene Location: 9955-11823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10249-11071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 49-11071 bp Feature: domain Description: Intron_maturas2 Location: 11140-11446 bp Feature: domain Description: Intron_maturas2 Location: 11140-11446 bp Feature: domain Description: HNHc Note: nucleases Location: 11620-11770 bp Feature: domain Description: HNHc Note: nucleases Location: 1162 0-11770 bp Feature: gene Location: 11741-12277 bp Feature: gene Location: 12541-13314 bp Feature: domain Description: PAPS_reductase Location: 12553-12943 bp Feature: domain Description: PAPS_reductase Location: 12 553-12 943 bp Feature: domain Description: PRK13794 Location: 13054-13150 bp Feature: domain Description: PRK13794 Location: 13054-13150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CcmA (COG4133), HTH_BmrR (cd01107), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PAPS_reductase (TIGR02057), PRK13794 (hypothetical protein; Provisional)

Seq: RAYO01000112.1 (555 bp)
Overview 1 RT 1: 3-294 bp Neighborhood of RT #1 [3, 554] RVT-UNC Feature: gene Location: 3-554 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 57-294 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 57-294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG10/RVT-UG19/RVT-UG17/RVT-GII(RVT-UNC)

Seq: RAYO01000026.1 (66594 bp)
Overview 1 RT 1: 32155-38397 bp 2 RT 2: 49793-54424 bp Neighborhood of RT #1 [32155, 38408] Phage_int_SAM_1 INT_RitC_C_like TraC-F-type RVT-GII Intron_maturas2 HNHc VirB4_CagE Neighborhood of RT #2 [49793, 54438] Maff2 TraG-D_C RVT-GII HNHc VirD4 TnpW Feature: gene Location: 32155-33174 bp Feature: domain Description: Phage_int_SAM_1 Location: 32206-32455 bp Feature: domain Description: Phage_int_SAM_1 Location: 32206-324 55 bp Feature: domain Description: INT_RitC_C_like Location: 32533-33085 bp Feature: domain Description: INT_RitC_C_like Location: 32533-33085 bp Feature: gene Location: 33413-34570 bp Feature: domain Description: TraC-F-type Location: 33521-34376 bp Feature: domain Description: TraC-F-type Location: 33521-34 376 bp Feature: gene Location: 34659-36488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34941-35751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 94 1-35751 bp Feature: domain Description: Intron_maturas2 Location: 35826-36132 bp Feature: domain Description: Intron_maturas2 Location: 35826-36132 bp Feature: domain Description: HNHc Note: nucleases Location: 36303-36453 bp Feature: domain Description: HNHc Note: nucleases Location: 36303-364 53 bp Feature: gene Location: 36495-36878 bp Feature: gene Location: 37089-38408 bp Feature: domain Description: VirB4_CagE Location: 37914-38397 bp Feature: domain Description: VirB4 _CagE Location: 37914 -38397 bp Feature: gene Location: 49793-49933 bp Feature: domain Description: Maff2 Location: 49796-49922 bp Feature: domain Description: Maff2 Location: 4 9796-4 9922 bp Feature: gene Location: 50014-51048 bp Feature: domain Description: TraG-D_C Location: 50482-50836 bp Feature: domain Description: TraG-D_C Location: 504 82-50836 bp Feature: gene Location: 51230-53137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51569-52316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51569-52316 bp Feature: domain Description: HNHc Note: nucleases Location: 52883-53021 bp Feature: domain Description: HNHc Note: nucleases Location: 52883-53021 bp Feature: gene Location: 53850-54083 bp Feature: domain Description: VirD4 Location: 53859-54039 bp Feature: domain Description: VirD4 Location: 53859-54 039 bp Feature: gene Location: 54157-54438 bp Feature: domain Description: TnpW Location: 54328-54424 bp Feature: domain Description: TnpW Location: 54 328-54 4 24 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), TraC-F-type (TIGR02746), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), VirB4_CagE (TIGR00929), Maff2 (pfam12750), TraG-D_C (pfam12696), VirD4 (COG3505)
TnpW (pfam14202)

Seq: RAYO01000090.1 (2591 bp)
Overview 1 RT 1: 105-2398 bp Neighborhood of RT #1 [105, 2398] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 105-1937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1200 bp Feature: domain Description: Intron_maturas2 Location: 1272-1584 bp Feature: domain Description: Intron_maturas2 Location: 1272-15 84 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: domain Description: HNHc Note: nucleases Location: 1734-1908 bp Feature: gene Location: 2183-2398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: RAYO01000027.1 (65400 bp)
Overview 1 RT 1: 11818-16105 bp Neighborhood of RT #1 [11818, 16221] RVT-DGRs Avd_like Feature: gene Location: 11818-12621 bp Feature: gene Location: 12642-14339 bp Feature: gene Location: 14323-15399 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14533-15142 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14533-15142 bp Feature: gene Location: 15550-15681 bp Feature: gene Location: 15733-16221 bp Feature: domain Description: Avd_like Location: 15766-16105 bp Feature: domain Description: Avd_like Location: 1576 6 -16 105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376)