myRT

myRT report for GCA_003628365.1_ASM362836v1

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Seq: RCAK01000007.1 (163295 bp)
Overview 1 RT 1: 28837-35080 bp Neighborhood of RT #1 [28837, 35217] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28837-29103 bp Feature: domain Description: Phage_integrase Location: 28903-28999 bp Feature: domain Description: Phage_integrase Location: 28903-28999 bp Feature: gene Location: 29186-29656 bp Feature: gene Location: 30003-33212 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30531-31020 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30531 -31 020 bp Feature: domain Description: nitrilase Location: 32526-33123 bp Feature: domain Description: nitrilase Location: 32526-331 23 bp Feature: gene Location: 33507-34310 bp Feature: domain Description: AbiEi_3_N Location: 33540-33801 bp Feature: domain Description: AbiEi_3_N Location: 33540-33801 bp Feature: domain Description: AbiEi_3 Location: 33813-34269 bp Feature: domain Description: AbiEi_3 Location: 3381 3-34269 bp Feature: gene Location: 34297-35217 bp Feature: domain Description: AbiEii Location: 34339-35080 bp Feature: domain Description: AbiEii Location: 34339-35080 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: RCAK01000111.1 (26052 bp)
Overview 1 RT 1: 22849-25964 bp Neighborhood of RT #1 [22849, 25964] GIIM HNHc RVT_N RVT-GII Feature: gene Location: 22849-23184 bp Feature: gene Location: 23299-23967 bp Feature: domain Description: GIIM Note: maturase Location: 23329-23563 bp Feature: domain Description: GIIM Note: maturase Location: 2 332 9-2 3563 bp Feature: domain Description: HNHc Note: nucleases Location: 23773-23932 bp Feature: domain Description: HNHc Note: nucleases Location: 2 3773-2 3932 bp Feature: gene Location: 24018-24965 bp Feature: domain Description: RVT_N Location: 24066-24303 bp Feature: domain Description: RVT_N Location: 2 4066-2 4303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24354-24954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4354-2 4954 bp Feature: gene Location: 25245-25427 bp Feature: gene Location: 25539-25964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), RVT-GII

Seq: RCAK01000004.1 (2712 bp)
Overview 1 RT 1: 1-2710 bp Neighborhood of RT #1 [1, 2709] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-294 bp Feature: domain Description: PHA02517 Location: 4-229 bp Feature: domain Description: PHA02517 Location: 4-229 bp Feature: gene Location: 886-2409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1159-1891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1159-1891 bp Feature: domain Description: GIIM Note: maturase Location: 1966-2164 bp Feature: domain Description: GIIM Note: maturase Location: 1966-2164 bp Feature: gene Location: 2527-2709 bp Feature: domain Description: PHA02517 Location: 2530-2710 bp Feature: domain Description: PHA02517 Location: 253 0-2710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)