myRT

myRT report for GCA_003628445.1_ASM362844v1

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Seq: RBZO01000041.1 (26800 bp)
Overview 1 RT 1: 560-5696 bp Neighborhood of RT #1 [560, 5788] RimL Acetyltransf_3 RVT-GII HNHc Acetyltransf_1 VOC Feature: gene Location: 560-1123 bp Feature: domain Description: RimL Location: 596-1121 bp Feature: domain Description: RimL Location: 596-1 1 21 bp Feature: gene Location: 1249-1758 bp Feature: domain Description: Acetyltransf_3 Location: 1285-1696 bp Feature: domain Description: Acetyltransf_3 Location: 1 285-1 696 bp Feature: gene Location: 2664-4367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2853-3549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2853-3549 bp Feature: domain Description: HNHc Note: nucleases Location: 4122-4257 bp Feature: domain Description: HNHc Note: nucleases Location: 41 22-4257 bp Feature: gene Location: 4662-5123 bp Feature: domain Description: Acetyltransf_1 Location: 4713-5049 bp Feature: domain Description: Acetyltransf_1 Location: 471 3-5049 bp Feature: gene Location: 5324-5788 bp Feature: domain Description: VOC Location: 5351-5696 bp Feature: domain Description: VOC Location: 5351 -5696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RimL (COG1670), Acetyltransf_3 (pfam13302), RVT-GII, HNHc (smart00507), Acetyltransf_1 (pfam00583), VOC (cl14632)

Seq: RBZO01000036.1 (39099 bp)
Overview 1 RT 1: 266-3123 bp Neighborhood of RT #1 [266, 3713] RVT-GII HNHc Polbeta Feature: gene Location: 266-2029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 524-1223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 4-12 2 3 bp Feature: domain Description: HNHc Note: nucleases Location: 1775-1916 bp Feature: domain Description: HNHc Note: nucleases Location: 1775-1916 bp Feature: gene Location: 2258-2440 bp Feature: gene Location: 2904-3713 bp Feature: domain Description: Polbeta Location: 2937-3123 bp Feature: domain Description: Polbeta Location: 2 937-312 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), Polbeta (pfam18765)

Seq: RBZO01000083.1 (1187 bp)
Overview 1 RT 1: 3-1014 bp Neighborhood of RT #1 [3, 1106] RVT-GII GIIM Feature: gene Location: 3-1106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45-726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45-726 bp Feature: domain Description: GIIM Note: maturase Location: 789-1014 bp Feature: domain Description: GIIM Note: maturase Location: 789-1014 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RBZO01000073.1 (2174 bp)
Overview 1 RT 1: 648-1767 bp Neighborhood of RT #1 [648, 2081] RVT-GII GIIM Feature: gene Location: 648-2081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1572-1767 bp Feature: domain Description: GIIM Note: maturase Location: 1572-1767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: RBZO01000003.1 (192968 bp)
Overview 1 RT 1: 133189-140119 bp Neighborhood of RT #1 [133189, 140124] PRK13927 PRK00024 RVT-GII Intron_maturas2 RVT_N RVT-GII GIIM HNHc RadC Feature: gene Location: 133189-134229 bp Feature: domain Description: PRK13927 Location: 133207-134194 bp Feature: domain Description: PRK13927 Location: 133207-134194 bp Feature: gene Location: 134451-134612 bp Feature: domain Description: PRK00024 Location: 134454-134607 bp Feature: domain Description: PRK00024 Location: 13445 4-134607 bp Feature: gene Location: 134818-136572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135082-135913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135 082-135 913 bp Feature: domain Description: Intron_maturas2 Location: 135991-136381 bp Feature: domain Description: Intron_maturas2 Location: 135 991-136381 bp Feature: gene Location: 136748-138568 bp Feature: domain Description: RVT_N Location: 136802-137045 bp Feature: domain Description: RVT_N Location: 136802-137045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137102-137756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 137102-13775 6 bp Feature: domain Description: GIIM Note: maturase Location: 137819-138053 bp Feature: domain Description: GIIM Note: maturase Location: 137819-13805 3 bp Feature: domain Description: HNHc Note: nucleases Location: 138260-138425 bp Feature: domain Description: HNHc Note: nucleases Location: 138260-138425 bp Feature: gene Location: 138267-138965 bp Feature: gene Location: 139633-140124 bp Feature: domain Description: RadC Location: 139651-140119 bp Feature: domain Description: RadC Location: 13965 1-140119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13927 (rod shape-determining protein MreB; Provisional), PRK00024 (DNA repair protein RadC), RVT-GII, Intron_maturas2 (pfam01348), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507), RadC (pfam04002)

Seq: RBZO01000015.1 (101428 bp)
Overview 1 RT 1: 6621-13304 bp Neighborhood of RT #1 [6621, 13304] COG2865 HTH_24 RVT-AbiA HEPN_AbiA_CTD AAA_23 DUF3732 Feature: gene Location: 6621-6830 bp Feature: gene Location: 7019-8710 bp Feature: domain Description: COG2865 Location: 7070-8471 bp Feature: domain Description: COG286 5 Location: 7070-8471 bp Feature: domain Description: HTH_24 Location: 8540-8663 bp Feature: domain Description: HTH_24 Location: 8540-86 6 3 bp Feature: gene Location: 8812-10701 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 9157-9658 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 9157-96 58 bp Feature: domain Description: HEPN_AbiA_CTD Location: 10291-10672 bp Feature: domain Description: HEPN_AbiA_CTD Location: 10291-106 72 bp Feature: gene Location: 10880-12811 bp Feature: domain Description: AAA_23 Location: 10925-11780 bp Feature: domain Description: AAA_23 Location: 10925-11780 bp Feature: domain Description: DUF3732 Location: 12251-12785 bp Feature: domain Description: DUF3732 Location: 12251-12785 bp Feature: gene Location: 12813-13304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2865 (Predicted transcriptional regulator, contains HTH domain ), HTH_24 (pfam13412), RVT-AbiA, HEPN_AbiA_CTD (pfam18732), AAA_23 (pfam13476), DUF3732 (pfam12532)

Seq: RBZO01000023.1 (65451 bp)
Overview 1 RT 1: 11126-14717 bp Neighborhood of RT #1 [11126, 14717] HTH_Tnp_1 HTH_21 RVT-GII Feature: gene Location: 11126-11506 bp Feature: domain Description: HTH_Tnp_1 Location: 11129-11282 bp Feature: domain Description: HTH_Tnp_1 Location: 11129-11282 bp Feature: gene Location: 11525-11710 bp Feature: domain Description: HTH_21 Location: 11555-11636 bp Feature: domain Description: HTH_21 Location: 11555-11636 bp Feature: gene Location: 12546-13991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12555-13296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12555-13296 bp Feature: gene Location: 14033-14278 bp Feature: gene Location: 14571-14717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), HTH_21 (pfam13276), RVT-GII

Seq: RBZO01000071.1 (2209 bp)
Overview 1 RT 1: 297-1950 bp Neighborhood of RT #1 [297, 2069] RVT-GII HNHc Feature: gene Location: 297-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-1251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 555-1251 bp Feature: domain Description: HNHc Note: nucleases Location: 1806-1950 bp Feature: domain Description: HNHc Note: nucleases Location: 18 06-1950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)