myRT

myRT report for GCA_003629135.1_ASM362913v1

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Seq: RAFM01000190.1 (9910 bp)
Overview 1 RT 1: 6899-9860 bp Neighborhood of RT #1 [6899, 9907] PHA02517 DEXHc_Snf SF2_C_SNF RVT-GII GIIM HNHc Feature: gene Location: 6899-7126 bp Feature: domain Description: PHA02517 Location: 6902-7124 bp Feature: domain Description: PHA0251 7 Location: 6902-71 24 bp Feature: gene Location: 7282-8541 bp Feature: domain Description: DEXHc_Snf Location: 7315-7471 bp Feature: domain Description: DEXHc_Snf Location: 731 5-7471 bp Feature: domain Description: SF2_C_SNF Location: 7999-8377 bp Feature: domain Description: SF2_C_SNF Location: 7999-8377 bp Feature: gene Location: 8609-9907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8612-9185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 861 2-91 85 bp Feature: domain Description: GIIM Note: maturase Location: 9239-9470 bp Feature: domain Description: GIIM Note: maturase Location: 9239-9470 bp Feature: domain Description: HNHc Note: nucleases Location: 9704-9860 bp Feature: domain Description: HNHc Note: nucleases Location: 9704-9860 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DEXHc_Snf (cd17919), SF2_C_SNF (cd18793), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: RAFM01000224.1 (11010 bp)
Overview 1 RT 1: 285-8746 bp Neighborhood of RT #1 [285, 8748] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 285-1970 bp Feature: domain Description: RVT_N Location: 342-582 bp Feature: domain Description: RVT_N Location: 342 -582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630-1266 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 630-12 66 bp Feature: domain Description: GIIM Note: maturase Location: 1320-1551 bp Feature: domain Description: GIIM Note: maturase Location: 132 0-1551 bp Feature: domain Description: HNH Note: nucleases Location: 1803-1941 bp Feature: domain Description: HNH Note: nucleases Location: 1803-1941 bp Feature: gene Location: 3051-6788 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3159-3816 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 3159-3816 bp Feature: domain Description: PRK09776 Location: 4029-4500 bp Feature: domain Description: PRK09776 Location: 402 9-4500 bp Feature: domain Description: PAS Location: 4557-5082 bp Feature: domain Description: PAS Location: 4557-5082 bp Feature: domain Description: PRK10060 Location: 5094-6738 bp Feature: domain Description: PRK10060 Location: 5094-6738 bp Feature: gene Location: 6895-8748 bp Feature: domain Description: PRK05658 Location: 6907-8746 bp Feature: domain Description: PRK05658 Location: 6907-8746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: RAFM01000604.1 (7174 bp)
Overview 1 RT 1: 17-5612 bp Neighborhood of RT #1 [17, 5612] LptD RVT_N RVT-GII YkfC HNH Feature: gene Location: 17-2791 bp Feature: domain Description: LptD Location: 212-2777 bp Feature: domain Description: LptD Location: 212-2777 bp Feature: gene Location: 2924-4636 bp Feature: domain Description: RVT_N Location: 2981-3224 bp Feature: domain Description: RVT_N Location: 2981-3 224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3269-3905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 269-3 905 bp Feature: domain Description: YkfC Location: 4115-4265 bp Feature: domain Description: YkfC Location: 4115-4265 bp Feature: domain Description: HNH Note: nucleases Location: 4442-4580 bp Feature: domain Description: HNH Note: nucleases Location: 4442-4580 bp Feature: gene Location: 5059-5328 bp Feature: gene Location: 5478-5612 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LptD (COG1452), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844)

Seq: RAFM01000259.1 (2639 bp)
Overview 1 RT 1: 2-785 bp Neighborhood of RT #1 [2, 2635] rve_3 RVT-UG5 Feature: gene Location: 2-259 bp Feature: domain Description: rve_3 Location: 5-176 bp Feature: domain Description: rve_3 Location: 5-176 bp Feature: gene Location: 353-2635 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 356-785 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 356-785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), RVT-UG5